Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (253), Expect = 2e-26
 Identities = 84/336 (25%), Positives = 156/336 (46%), Gaps = 24/336 (7%)

Query: 4   LSWSIALVLASSAYAQNQDSNE-------RFTVKTELISQIVELDGVVQPVNQGSLAAQT 56
           LS ++  +L +SA    ++ N+         +V+++ ISQ + + G ++      +AA+ 
Sbjct: 7   LSLTLLTLLMNSAVLSAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEV 66

Query: 57  SGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQL 116
           +G+V  + V  N  VKK Q+L+++         D AQA L  A A  ++ Q +L  Y +L
Sbjct: 67  AGKVDMIAVQANQQVKKGQILIKLDD-------DKAQAALVEAKAYLQDEQRKLTEYERL 119

Query: 117 FPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELG 176
             + AI+  ++D+  AR     A + +AQA       +L   +ITAP+DG V       G
Sbjct: 120 LKRNAITPTEIDAQRARVEIGQARLNAAQA-------NLADLHITAPFDGTVGFIDFSRG 172

Query: 177 ETVAPGTPLLRGFSLDELRVETEIPQRYQPYVAD--VSQFTVRTAQGEQLKPVEFSLFSY 234
           + V+ G+ LL   +L  +R++ +IP+RY P ++     Q +       Q +    ++ S 
Sbjct: 173 KWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSR 232

Query: 235 ADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVYRVNN 294
            + ++   + R+  P     L PGM +    ++      ++P  A+        VY +  
Sbjct: 233 INQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISAPIIPVQALEYSGTKRFVYVIGE 292

Query: 295 GQRA-LNPVRLGQVYGDYVEVLSGLELGDVVATQAV 329
              A    V LG    + V +  GL++G+ +  Q +
Sbjct: 293 DNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGI 328