Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 108/364 (29%), Positives = 166/364 (45%), Gaps = 41/364 (11%)

Query: 2   KALSWSIALVLASS-AYAQN--QDSNERFTVKTEL--ISQIVELDGVVQPVNQGSLAAQT 56
           K L   + LVLA+  AY+    + + E  T K E   I   V   GV+Q + Q  + AQ 
Sbjct: 8   KVLIVVVLLVLAAGIAYSVQSPEKAPEYLTAKVERTDIENSVLASGVLQGIKQVDVGAQV 67

Query: 57  SGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQ-------AQLASATAQNREAQAQ 109
           SG++  L V++ D VK+ Q L EI  V     L  +Q       AQ  +A AQ ++A+A 
Sbjct: 68  SGQLKSLKVNLGDKVKQGQWLAEIDPVVLQNTLRQSQVNEQNLIAQKDAAVAQLKDAKAI 127

Query: 110 LNRYRQLFPKGAISKDQMDSAE-------ARARSADAAVKSAQAAVEQAKESLGYTNITA 162
             RY+QL    AIS+   D+A+       A  RS +A V+ A+  +E A+ +LGYT I A
Sbjct: 128 YQRYKQLRADDAISQKDFDTAQSDFEVRSANLRSLEAQVRDARIQIETARINLGYTRIVA 187

Query: 163 PYDGIVTQRMVELGETVAPG--TP-LLRGFSLDELRVETEIPQRYQPYVADVSQ--FTV- 216
           P  G V   + + G+TV     TP +L+   LD + V+ ++ +    ++    +  FT+ 
Sbjct: 188 PISGDVVGIVTQEGQTVIASQLTPVILKLADLDTMTVKAQVSEADVIHITPGQEVYFTIL 247

Query: 217 ---RTAQGEQLKPVEFSLFSYADPQSHT---------FKTRLELPQNSAALVPGMWVKTE 264
                    +LK  E +  ++ D QS T         +    ++P     L   M  +  
Sbjct: 248 GDAEKRYYAKLKGTEPAPQNFLDAQSSTASKPNSAVFYNALFDVPNPDHRLRISMTAQVH 307

Query: 265 F-NYGQREVLVVPSSAV-LRRAELSAVYRV--NNGQRALNPVRLGQVYGDYVEVLSGLEL 320
                 ++VL VP +A+  +  + S   RV    GQ     V+ G      VE+ SGL  
Sbjct: 308 IVREKAKDVLTVPVAALGDKNGDGSFPVRVVDAQGQAQSRNVQTGINNNVRVEIKSGLAE 367

Query: 321 GDVV 324
           GD V
Sbjct: 368 GDQV 371