Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  105 bits (262), Expect = 2e-27
 Identities = 80/292 (27%), Positives = 125/292 (42%), Gaps = 9/292 (3%)

Query: 40  LDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASA 99
           L G VQ  N  ++ A+T+G V     D+ D V+  Q L  + A      + AAQA   +A
Sbjct: 77  LPGNVQAYNSAAIYARTNGYVRRWLADIGDRVRAGQPLAVLDAPDLDQQVAAAQADYQTA 136

Query: 100 TAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTN 159
            A  R A+    R+  +  + A+S+ + D       +  A   +A A V++ K   G+T 
Sbjct: 137 LANQRLAETTSKRWSAMLAQDAVSRQEADEKAGDLAARTAVSNAALANVKRLKAQQGFTR 196

Query: 160 ITAPYDGIVTQRMVELGETVAPGT----PLLRGFSLDELRVETEIPQRYQPYVAD--VSQ 213
           + AP+DG+VT R  ++G  V  G     PL     +  +R+   +PQ Y   V     + 
Sbjct: 197 LAAPFDGVVTSRSAQIGALVVSGNAAAQPLFTVSDIHRMRIYVRVPQGYSASVRPGMGAT 256

Query: 214 FTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNY--GQRE 271
            T+    G        S     D QS     +L+      AL PG + +  F    GQ  
Sbjct: 257 LTLPEYPGRSFNATLTSSSGAVDAQSGAVLVQLQAENPDGALKPGAFAQVSFKVGAGQGN 316

Query: 272 VLVVPSSAVLRRAELSAVYRVNNGQR-ALNPVRLGQVYGDYVEVLSGLELGD 322
            + +P SA+L      +V  V    R  + PV + +  G  V++ SGL   D
Sbjct: 317 GMTLPGSAILYSNNGPSVAVVGADNRITMKPVAIARDEGATVQIASGLSPND 368