Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., ABC export system, membrane fusion protein from Pseudomonas putida KT2440

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 105/353 (29%), Positives = 153/353 (43%), Gaps = 54/353 (15%)

Query: 30  KTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAAL 89
           + ++ S +  L G +QP     + AQ SG++  L+V+V D V K Q+L+EI    Q A L
Sbjct: 44  RADIESSVTAL-GTLQPRRYVDVGAQASGQIRNLHVEVGDQVHKGQLLVEIDPSTQQAKL 102

Query: 90  DAA-------QAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVK 142
           DA        +AQLA   AQ + AQ QL R R L   GA  ++ + +AEA+     A + 
Sbjct: 103 DAGRFSIDNLKAQLAEQRAQLKLAQQQLKRQRDLAAVGATREEDLQTAEAQLNVTQARID 162

Query: 143 SAQAAVEQAKES-------LGYTNITAPYDGIVTQRMVELGETV--APGTPL-LRGFSLD 192
             QA + QA  S       LGYT I AP DG V       G+T+     TPL LR   L 
Sbjct: 163 MYQAQIRQANASLRSDEAELGYTRIFAPMDGTVVAVDAREGQTLNAQQQTPLILRIAKLS 222

Query: 193 ELRVETEIPQ----RYQP----YVADVS------QFTVRTAQGEQLKPVEFSLFSYADPQ 238
            + V  ++ +    + QP    Y   ++        TVR       KP++ +      P 
Sbjct: 223 PMTVWAQVSEADIGKIQPGMTAYFTTLAGGKRRWTSTVRQVLPIPPKPLDQTSQGGGSPA 282

Query: 239 SHT----------FKTRLELPQNSAALVPGMWVKTEFNYGQ-REVLVVPSSAV------- 280
           S T          +   L++     AL+  M  +  F  GQ  +VL  P +A+       
Sbjct: 283 SATAGATGSQVVQYTVLLDVDNPDGALMAEMTTQVFFVVGQASQVLSAPLAALDDSDNEG 342

Query: 281 LRRAELSAVYRVNNGQRALNPVRLGQVYGDYVEVLSGLELGDVVATQAVTAKG 333
           LR A++       +G+     VR G      V++L GL  GD +   A  A G
Sbjct: 343 LRLAQVFG----RDGKVEQRKVRTGLSDRLRVQILDGLSEGDRLVIGAPAASG 391