Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  114 bits (286), Expect = 3e-30
 Identities = 107/353 (30%), Positives = 159/353 (45%), Gaps = 22/353 (6%)

Query: 3   ALSWSIALVLASSAYAQNQDSNERF-----TVKTELISQIVELDGVVQPVNQGSLAAQTS 57
           AL+ +IAL     A  Q+  +N  +     T+  E ++   EL G V+P+    + A+  
Sbjct: 12  ALAMAIALAGCEPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVP 71

Query: 58  GRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLF 117
           G V+    +    VK   VL +I      AAL  A+A LA A A  +EAQA++ RY  L 
Sbjct: 72  GIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEPLV 131

Query: 118 PKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGE 177
              A+S+   DSA A  RSA AAV+SAQA V+ A+ +LGY  +TAP  G + + +   G 
Sbjct: 132 KIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEGA 191

Query: 178 TVAPG--TPLLRGFSLDELRVE----TEIPQRYQPYVAD-----VSQFTVRTAQGEQLKP 226
            V  G  T + R   LD + ++         R +  + D      SQ      +G   + 
Sbjct: 192 LVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSADSQRLTAQVEGTDFQR 251

Query: 227 VEFSLFSYADPQSHTFKT--RLELPQNSAALVPGMWVKTEFNYG-QREVLVVPSSAVLRR 283
               +F+       T +   R         L+PGM+V+     G     ++VP  AV R 
Sbjct: 252 SGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAVQRG 311

Query: 284 AELSA-VYRVNNGQRALNPVRLGQVYGDYVEVLSGLELGD--VVATQAVTAKG 333
           ++  A V    NG      VR G + G   ++  GLE GD  +V + A  A G
Sbjct: 312 SDGQARVLVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPG 364