Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  100 bits (249), Expect = 6e-26
 Identities = 88/293 (30%), Positives = 130/293 (44%), Gaps = 17/293 (5%)

Query: 42  GVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATA 101
           G V+   +  LA +  G+V    V+    VK DQ L E+        L+A +AQLA+A A
Sbjct: 51  GEVRARFEPELAFRIGGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEA 110

Query: 102 QNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNIT 161
                +A+ +RY++L  +  +S  Q D+AE   R+  A +K A+A  + A     Y  + 
Sbjct: 111 NLALVRAERDRYQKLLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLR 170

Query: 162 APYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQRY-------QPYVADVSQF 214
           AP  G++ +R VE+G+ VA G  +    +  E  V   +P++        QP   ++   
Sbjct: 171 APQAGVIAKRQVEVGQVVAAGQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSH 230

Query: 215 TVRTAQG--EQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFNYGQREV 272
                QG   +L P        ADP+S TF  R+     +     G   +          
Sbjct: 231 PQARFQGRIRELSPA-------ADPRSRTFAARIAFTTAAVPAELGQSARVFIAKDGLIP 283

Query: 273 LVVPSSAVLRRAELSAVYRVNNGQRALN-PVRLGQVYGDYVEVLSGLELGDVV 324
           L VP SAV      + V+RVN   R     VRLG    D V VL GL+ GD V
Sbjct: 284 LAVPLSAVTAENGQAYVWRVNKESRLERATVRLGAYGSDSVPVLEGLDPGDWV 336