Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 94.4 bits (233), Expect = 4e-24
 Identities = 69/305 (22%), Positives = 137/305 (44%), Gaps = 18/305 (5%)

Query: 23  SNERFTVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISA 82
           S + + V        +   G V P     L ++ +GRV G+  +    V++ Q+LL ++ 
Sbjct: 45  SVDAYVVSPTAYQNKITTTGTVIPNEDVELRSEIAGRVTGINFEEGSRVRQGQLLLTVND 104

Query: 83  VQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVK 142
            +        +AQL    +  +  +    R R L  K  IS+ + D    +  +A A ++
Sbjct: 105 AEM-------RAQLQKLESNRKLYEDMEKRQRTLLEKEYISEQEYDQVSNQLATATADIQ 157

Query: 143 SAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQ 202
           + +A++ +A        + AP+DG++  R V  G  V+  TP+ R   +  ++++  IP 
Sbjct: 158 ALKASLAKAY-------VRAPFDGVIGLRQVSEGSYVSATTPIARLVDISPVKIDFAIPG 210

Query: 203 RYQPYVADVSQFTVRTAQG--EQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMW 260
           RY   V +  Q T  T +G  E  +   +++    DP + T + R      +  + PG +
Sbjct: 211 RYSQEVHEGDQITF-TVEGSPETYQAKVYAIQPNIDPTTRTLQVRALFDNKNEEVRPGAF 269

Query: 261 VKTEFNYGQ-REVLVVPSSAVLRRAELSAVYRVNNGQRALNPVRLGQVYGDYVEVLSGLE 319
           VK         + +++P+ A++  A    V+ V  G+     V++GQ     ++++ G+ 
Sbjct: 270 VKVSITLKDVDDAILIPTEAIIPEATGHKVFLVKGGKAVPQMVKIGQRSETMIQIMEGIT 329

Query: 320 LGDVV 324
            GD +
Sbjct: 330 PGDTL 334