Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., efflux RND transporter periplasmic adaptor subunit from Pectobacterium carotovorum WPP14

 Score =  139 bits (350), Expect = 1e-37
 Identities = 100/311 (32%), Positives = 159/311 (51%), Gaps = 9/311 (2%)

Query: 29  VKTELIS-----QIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAV 83
           VKT+L+      + V L G ++P  +  L  +  GRV+   VDV   VK+  V+  + A 
Sbjct: 34  VKTQLVMPAMNREPVSLTGEIRPHEETVLGFRLDGRVLNRLVDVGASVKRGDVIATLDAR 93

Query: 84  QQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKS 143
                L +AQA LASA +  R A++  +R + L P GAI++ Q+D A+A   +A +  +S
Sbjct: 94  DSENQLRSAQADLASAASAERLAKSNFSRMKALAPGGAIARVQLDEAQANWDAAVSRRES 153

Query: 144 AQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDELRVETEIPQR 203
           AQA V+ A+E L YT +TA  DG++T   V  G+ V+ G  ++R  SLD      ++P+R
Sbjct: 154 AQATVKGAQERLSYTQLTAAQDGVITTVSVNPGQVVSAGQEVVRLASLDGRDAVFDVPER 213

Query: 204 Y--QPYVADVSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWV 261
                  + V + ++ +    Q +     +   ADP + TF+ R+ L    AA+V G  V
Sbjct: 214 LVNPSLPSRVIRVSLLSEPSVQAEGRVRDISPQADPVTRTFRVRVTLTSPPAAMVLGASV 273

Query: 262 KTEFNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRA--LNPVRLGQVYGDYVEVLSGLE 319
                     V+ +P+SA+ R+ +  AVY VN   +   L PV + +     + V  GL+
Sbjct: 274 NGAIQQSDTAVIELPASALTRQGDKPAVYVVNVETQTVRLQPVTIARYSDTAIFVAEGLK 333

Query: 320 LGDVVATQAVT 330
            GD V T  V+
Sbjct: 334 QGDRVVTAGVS 344