Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., multidrug resistance efflux transporter (NCBI) from Escherichia coli BW25113

 Score = 91.7 bits (226), Expect = 3e-23
 Identities = 83/318 (26%), Positives = 137/318 (43%), Gaps = 23/318 (7%)

Query: 28  TVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSA 87
           T+    ++ + EL G   P     +  Q  G ++       D V +   L +I      A
Sbjct: 40  TLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQA 99

Query: 88  ALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAA 147
            L++A+  LA A +    A+   NR   L     +S+   D+A  +   A+A V  A+AA
Sbjct: 100 ELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAA 159

Query: 148 VEQAKESLGYTNITAPYDGIVTQRMVELGE--TVAPGTPLLRGFSLDELRVE-TEIPQRY 204
           VEQA  +L Y N+T+P  G+  +  V +G   T      L+    LD + V+ T+  Q +
Sbjct: 160 VEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDF 219

Query: 205 QPYVADVSQFTVRTAQGEQLKPVEFSL-----------FSYADP----QSHTFKTRLELP 249
                +V+   ++  QG    PV+ +L             ++DP     + +   R   P
Sbjct: 220 LRMKEEVASGQIKQVQGS--TPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFP 277

Query: 250 QNSAALVPGMWVKTEFNYGQRE-VLVVPSSAVLRRAE--LSAVYRVNNGQRALNPVRLGQ 306
             +  L+PGM+V    + G R+ VL+VP   V   A+   +A+    +    L  +   +
Sbjct: 278 NPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASK 337

Query: 307 VYGDYVEVLSGLELGDVV 324
             GD   V SGL+ GD V
Sbjct: 338 AIGDQWVVTSGLQAGDRV 355