Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score =  108 bits (269), Expect = 3e-28
 Identities = 79/300 (26%), Positives = 143/300 (47%), Gaps = 12/300 (4%)

Query: 39  ELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLAS 98
           ++ G ++ ++   L A+T G +  ++     +VKK  +L E+   +  AAL  AQA++ S
Sbjct: 39  QIPGRIEAIHTVELRARTEGAIAKIHFRDGQYVKKGDLLFELDDAEPRAALRLAQAEVRS 98

Query: 99  ATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYT 158
           A A  R+AQ QL+R+  L    AIS+  +D+A  +   A AA++ A+A +E    +L YT
Sbjct: 99  AEATLRQAQQQLSRFESLGSSNAISRHDVDNARMQRDVASAALEQAKARLETRNVTLNYT 158

Query: 159 NITAPYDGIVTQRMVELGETVAPGT----------PLLRGFSLDELRVETEIPQRYQPYV 208
            IT+P DG V      +G  V P +          P+   F+L+E    T+  Q      
Sbjct: 159 RITSPIDGRVGHSRFHVGSLVNPASGVLVEVVQLDPIRIAFALEEGAFATKAGQHADISA 218

Query: 209 ADVSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVPGMWVKTEFN-Y 267
              +      + G+++     S+ +  DP++ +   R E       L+PG  V       
Sbjct: 219 MKQAWQAFIDSNGQRVIGELTSVDNRIDPRTASVMLRAEFANPRHQLLPGGSVNVTLRPA 278

Query: 268 GQREVLVVPSSAVLRRAELSAVYRVN-NGQRALNPVRLGQVYGDYVEVLSGLELGDVVAT 326
            ++ VL +P++AV +  +    + VN +G+  + P+++    G    + SG++ G+   T
Sbjct: 279 SEQPVLTLPAAAVQQNGDGFFAWVVNADGKAEMRPLKVAGQIGQQFRITSGVKPGERAIT 338