Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  102 bits (253), Expect = 2e-26
 Identities = 91/308 (29%), Positives = 136/308 (44%), Gaps = 27/308 (8%)

Query: 42  GVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATA 101
           G V P+N+  +  Q SG +  ++V+    V K Q L EI   +  AA + AQA L SA A
Sbjct: 55  GTVVPLNEIEIRPQVSGYINKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQAQATLKSAKA 114

Query: 102 QNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNIT 161
                +  L RY  L  + AI+K Q+D A+A   +A++ V SA+A V        Y+ IT
Sbjct: 115 NLERVKKDLARYEALDKQEAIAKQQLDYAKADILTAESQVSSAEAQVRSTLTDYNYSVIT 174

Query: 162 APYDGIVTQRMVELGETVAPGTPLLRGFSL-DELRVETEIPQRYQPYVADVSQFTVRTAQ 220
           AP+ G V    V LG  V+ G  LL   S  D + V+  + +R      DV +F+ +  +
Sbjct: 175 APFSGTVGISQVRLGAQVSAGQSLLNTLSSNDPVLVDFVVNER------DVRRFS-KMMK 227

Query: 221 GEQLKPVEFSL-FSYADP----------------QSHTFKTRLELPQNSAALVPGMWVKT 263
            E L    F++ F   D                 QS T   R+E P     L+PGM +  
Sbjct: 228 NESLPDSTFTIQFGENDVYRHHGELTTIDRAVGRQSGTINMRVEFPNPDRELIPGMTLNL 287

Query: 264 E-FNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRA-LNPVRLGQVYGDYVEVLSGLELG 321
              N    + + +P  AV  +     VY V +        V+LG   G  + V  GL+ G
Sbjct: 288 RVLNQDIGDQIAIPFKAVTEQMGEYFVYVVGDDSVVHQQNVQLGTKVGAEIVVREGLKPG 347

Query: 322 DVVATQAV 329
             +  + +
Sbjct: 348 QKIVVEGI 355