Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 87.0 bits (214), Expect = 8e-22
 Identities = 85/354 (24%), Positives = 154/354 (43%), Gaps = 65/354 (18%)

Query: 34  ISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQ 93
           I + V   GV++P  +  L+   +G ++ L +   D VK++ +L++I      +ALD  +
Sbjct: 51  IVEKVSASGVIEPETEVKLSPDVAGEIIELNISEGDSVKQNDLLVKIRPDNFISALDRTR 110

Query: 94  AQLASATAQNREAQAQLNRYRQLFPKGAI----------------------------SKD 125
           A L    A   ++QA L R   LF +  +                            +++
Sbjct: 111 ANLNQQKANLAQSQAALKRSEALFDRAKLQYERNKSLYESNVISDSEFEQATADYVSAEN 170

Query: 126 QMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVA----- 180
            + +A+    +A+  VKS+QA+VE+A E+L  TN+ AP DGIV++ +VE GE V      
Sbjct: 171 DLKAAQQSVEAAEYVVKSSQASVEEANENLRLTNVFAPTDGIVSKLLVEKGERVVGTQQM 230

Query: 181 PGTPLLRGFSLDELRVETEIPQ----RYQPYVADVSQFTVRTAQGEQLKPVEFSLFSYAD 236
            GT +LR   L  + V  ++ +    R       + +    +  GE+   V  S+ + A+
Sbjct: 231 AGTEMLRIADLSVMEVVVDVNENDIVRISLGDTTIIEVDAYSHTGEKFTGVVTSIANSAN 290

Query: 237 PQS---------------HTFKTRLELPQNSAALVPGMWVKTE-FNYGQREVLVVPSSAV 280
            ++               +    +L   +N     PGM    E     + +VL VP +AV
Sbjct: 291 EKATQDAVTEFEVEIRILNESYEKLITKENRYPFRPGMTASVEIITEKKADVLSVPLAAV 350

Query: 281 LRR-----------AELSAVYRVNNGQRA-LNPVRLGQVYGDYVEVLSGLELGD 322
             R           ++L  +  ++ G +A L  V+ G    + +E+L G++ G+
Sbjct: 351 TTRDDIRVDSTNAESDLQEIIFMSEGNKAHLTRVKTGISDFENIEILEGIKEGE 404