Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 74/317 (23%), Positives = 146/317 (46%), Gaps = 20/317 (6%)

Query: 19  QNQDSNERFTVKTELISQIVEL-----DGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKK 73
           Q   ++E   V+TE I +         +G  +P  + +L A+ SG+V+ +Y    D+V+K
Sbjct: 34  QAMKTSESIPVRTETIKKTAHKISFTSNGTFEPSQELTLKAEASGKVLKIYKKKGDYVRK 93

Query: 74  DQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQMDSAEAR 133
             V+ ++         +  Q++L+ +  + R+ +  L RY  L    AI++ Q++     
Sbjct: 94  GDVIAKLDD-------ELIQSELSISEVKLRQNEKDLGRYENLAGTEAITEKQLEEIRN- 145

Query: 134 ARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLLRGFSLDE 193
                 A K A + V+  K+ L  T ITAP  G + +  +E+G  ++PG  ++   ++  
Sbjct: 146 ------ATKMAASQVKMNKKRLANTAITAPISGYINEDYIEIGTLMSPGMNVVDIVNVKP 199

Query: 194 LRVETEIPQRYQPYVADVSQFTVRTAQ-GEQLKPVEFSLFSYADPQSHTFKTRLELPQNS 252
           L++   + +     ++      V+     E+    + S  S     S  ++  + L + +
Sbjct: 200 LKLVVNVSELEIARISVGDSVAVKVGVLPEKDFTGKVSFTSNKGDASLRYEVEIALQEET 259

Query: 253 AALVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRALNPVRLGQVYGDYV 312
           A + PGM+    F Y   E +++   A+    +   V+ V NG+  L  V+L QV  + +
Sbjct: 260 AQIKPGMFAYASFEYPAEEAILIDRKALANGVKNPEVFVVENGKAVLKKVKLAQVGDNKL 319

Query: 313 EVLSGLELGDVVATQAV 329
            +L GL+ GD + T  +
Sbjct: 320 VLLDGLKEGDKLVTSGL 336