Pairwise Alignments

Query, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  103 bits (257), Expect = 7e-27
 Identities = 87/301 (28%), Positives = 145/301 (48%), Gaps = 25/301 (8%)

Query: 40  LDGVVQPVNQGSLAAQTSGRVVGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASA 99
           + G V+   Q  L+ + SG+++   VDV   VK  Q+L  I   +Q A +D A A L SA
Sbjct: 49  ITGEVRARVQTDLSFRVSGKIIERLVDVGARVKTGQLLARIDPEEQKADIDVALANLQSA 108

Query: 100 TAQNREAQAQLNRYRQLFPKGAISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTN 159
            AQ  +AQ   +R + LF     S+  +D A+    +   AV+SAQA ++ A+++L YT 
Sbjct: 109 EAQQTQAQLTFDRQQNLFKTQVTSRSAVDKAQETLLTTQGAVRSAQAQLDTARDALSYTE 168

Query: 160 ITAPYDGIVTQRMVELGE---------TVAPGTPLLRGFSL-DELRVETEIPQRYQ-PYV 208
           + A  DG++T R VE+G+         T+A   P    F + + L +E +I        +
Sbjct: 169 LRADADGVITARNVEVGQVAQAAQLVFTLAHDGPRDAVFDVYESLFLERDIDNLVNVSLL 228

Query: 209 ADVSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRLELPQNSAALVP-GMWVKTEFNY 267
           +D +Q  +  A   ++ P         DP + T + ++ L  N    +P G  V   F +
Sbjct: 229 SDPAQ--IVAAPVREISPT-------IDPDNGTIRVKVGL--NGDMTMPLGAPVSGHFRF 277

Query: 268 GQREVLVVPSSAVLRRAELSAVYRVN--NGQRALNPVRLGQVYGDYVEVLSGLELGDVVA 325
            Q + + +P SA+  +    AV+ V+  + + A+ PV++         V  GL  GD+V 
Sbjct: 278 RQIDAIELPWSAMASQDGAPAVWLVDPRSSEVAMRPVQVADYETGQFVVTEGLNPGDLVV 337

Query: 326 T 326
           T
Sbjct: 338 T 338