Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1090 a.a., Efflux pump membrane transporter BepE from Xanthobacter sp. DMC5

 Score =  790 bits (2040), Expect = 0.0
 Identities = 463/1085 (42%), Positives = 657/1085 (60%), Gaps = 36/1085 (3%)

Query: 9    SQQKVNDMESR-LGISGRIAAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFA 67
            S+ + +  E+R LGI+G +   F  S +TPLL L     GL A++  P+EEEPQI V   
Sbjct: 5    SKGETHSGENRPLGIAGVLTRTFIASPLTPLLLLAAFAFGLIALITLPREEEPQISVPMV 64

Query: 68   DVYIPFPGASPREVESLVTTPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAV 127
            D+ +   G    +   LVT P E ++  I+G++ +YS ++ DG ++ A F  G   + A+
Sbjct: 65   DIRVSAQGLKAEDAVKLVTEPLETIVKAIDGVEHVYSQTEDDGVLVTARFLTGTSPDAAI 124

Query: 128  VRIYNKLYSNKDWMPQGVGVGEPIIKPKGIEDVPIVTITLADKSD---RFDQQQLTQVAH 184
            +R++ K+ +N D +P  VG+ EP+I  + I+DV I+ +TL  K +   R+    LT+VA 
Sbjct: 125  LRVHEKVRANLDRIP--VGITEPLIVGRSIDDVAILVLTLVPKPEAASRWTANDLTRVAR 182

Query: 185  GLETELKRIPGTRDIYTIGGQNTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRL 244
             L+ ++ ++P     Y +G Q   + V  DP +++ +GITL QL   L  AN++     +
Sbjct: 183  ELQADISKLPDIGLTYIVGEQPEEIRVAPDPERLSLYGITLAQLQGKLEGANRTFNTGTV 242

Query: 245  THDNQEFPVQVGQFLTRVEEVKQLVVGLHNGTPVYLEDIATVSFGVNTATQNVWTGDR-- 302
                 +  +  GQ L    E+  +++   +G PVY+ D+A V+     A   V   ++  
Sbjct: 243  REAAGQRTLVAGQTLQTPSEIGGILLTSRDGRPVYVRDVANVTLATQPAEHYVTHIEKGP 302

Query: 303  DGI--HPAVTIAVAKKGGENAVDVAKAVEARLVSLENQLIPQGIDVDITRDYGQTAADKS 360
            DG+   PAV++A+AK+ G NAV +A+ V  ++ +     +P  ++V +TR+YG++A +K+
Sbjct: 303  DGLTRRPAVSLAIAKRPGTNAVVIAEEVLRQIEAAHGSTLPADVEVKVTRNYGESANEKA 362

Query: 361  NTLMGKLAFATTAVVILVLLTMGWRESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFAL 420
            N L+  L  AT ++V+LV   +GWRE++VV + I  T+++TLFA+   G+TLNRVSLFAL
Sbjct: 363  NELLLHLGLATVSIVVLVGFAIGWREALVVAVVIPTTILLTLFAARLMGYTLNRVSLFAL 422

Query: 421  IFSIGILVDDAIVVVENIHRHMAM--GKRKLSELIPPAVDEVGGPTILATLTVIAALLPM 478
            IFSIGILVDDAIVV+ENI RH AM  G+ +    I  AV EVG PTI+ATLTV+AALLPM
Sbjct: 423  IFSIGILVDDAIVVIENIARHWAMKDGRSRAQGAID-AVAEVGNPTIVATLTVVAALLPM 481

Query: 479  AFVSGLMGPYMSPIPINASMGMLISLAVAFVLSPWLAGKFL------KAGHHQEEGKAAN 532
             FVSG+MGPYMSPIP NAS  M+ S  VA VL+PWL  K         AGH  + G+AA+
Sbjct: 482  LFVSGMMGPYMSPIPANASAAMVFSFFVAVVLTPWLMLKIAGRAGQDDAGHGGDHGEAAD 541

Query: 533  G-----IFHKIMSPFVTAPKQGRNRLFLLLTILALIAGSVLLPVFQAVVLKMLPFDNKSE 587
            G      + ++  P +T+  + R   FL    +A +A S+ L    AV +K+LPFDNK+E
Sbjct: 542  GGRLGRFYVRVARPILTS--RARAGAFLATVGVATLA-SLSLFYTHAVTVKLLPFDNKTE 598

Query: 588  FQIVLDMPEGSSLEKTQRVLFEMGATLNDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQ 647
              ++LDMP  + +E+T   L  M   L+D+PE   +Q +AGTAAP NFNGLVRHY +R+ 
Sbjct: 599  LAVILDMPADTPVERTDSTLNAMVNALSDLPESVSFQTHAGTAAPFNFNGLVRHYGLRSA 658

Query: 648  AHQGDIQVNLLGRKERDRDSHTIASQLRPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAE 707
              QGDIQ+NL  + ER R SH IA  +R +L  IA   G  ++VVE PPGPPV + +LAE
Sbjct: 659  PKQGDIQINLKEKGERSRSSHEIALDVRNRLKSIALPSGSSLRVVEPPPGPPVLATLLAE 718

Query: 708  VYGPTQEIRNEAARKVREIFRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIV 767
            +YGP  + R   ARKVR+ F     IVDVD       E+ ++ ID+      +V    + 
Sbjct: 719  IYGPDPDTRRSVARKVRQAFESVPFIVDVDDSFGTPGERVRLAIDQDNLEFYKVEQGDVY 778

Query: 768  DALATAVGGKPITYLHSEHSKYPIPIQIQATETAKVRLEQVLNMKVGS---PNGHAY-PL 823
            DA+     G  + Y H    + PIPI+++ ++  K   E+ L   V +   P G     L
Sbjct: 779  DAIRGIFAGGTLGYSHRGGGRAPIPIRLEMSKGNKAVDERTLATPVPANALPGGRGVVEL 838

Query: 824  SDLVEVRQTRMDDYIVHKNLVPMVMVVGDMSGELDSPLYGMFEIGFALDEQ----MGLAQ 879
             D+V V +      I   N  P  MV  D++G  ++P+YGM  +  AL+      +    
Sbjct: 839  GDVVRVVREPASFPIFRHNGRPAEMVTADLAGTYEAPVYGMMAVSKALENMDFGSLPKPV 898

Query: 880  YYIH-QPDGLSGVAVAWDGEWTVTYETFRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIM 938
              +H QP   +   + WDGEW VT+ TFRDMG A+ V ++ IY+LVVAQF S+ +PL+I+
Sbjct: 899  IALHGQPSDETKPTLLWDGEWEVTWVTFRDMGGAFIVAILGIYILVVAQFGSFKLPLVIL 958

Query: 939  APIPLTIIGVMPGHALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQQVEQGMAFSEA 998
             PIPLT IG+M GH L GA F+ATSMIG IALAGIIVRNSILLVDFI      G    E 
Sbjct: 959  TPIPLTFIGIMTGHWLFGAPFSATSMIGFIALAGIIVRNSILLVDFIRHARTPGRPLEEV 1018

Query: 999  VIQSAAVRAKPIMLTALAAMIGAVFILDDPIFNGLAISLIFGIFVSTVLTLLVIPVLYYV 1058
            ++Q+ A+R KPI+LTALAAMIGA  IL DPIF GLAISL+FG+  ST LT+LVIP +Y V
Sbjct: 1019 LLQAGAIRFKPILLTALAAMIGAAVILTDPIFQGLAISLLFGLASSTALTVLVIPAIYVV 1078

Query: 1059 VMRKR 1063
            +  +R
Sbjct: 1079 LRGRR 1083