Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system from Variovorax sp. SCN45

 Score =  264 bits (674), Expect = 3e-74
 Identities = 247/1052 (23%), Positives = 475/1052 (45%), Gaps = 74/1052 (7%)

Query: 37   PLLALVG----LLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTPAEQV 92
            P+LALV     LL+G  A+   P  + P  + T   +   +PGASP  ++  VT P  Q 
Sbjct: 11   PVLALVVSTLILLLGARALGDLPVRQYPLTESTTLTITTQYPGASPELMQGFVTQPIAQA 70

Query: 93   ISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQGVGVGEPII 152
            ++ IE +D + S S    ++I    K+    N A+ +   ++   K  +P      +P+I
Sbjct: 71   VATIENVDYLSSSSTLGRSVISVRMKLNADANQALTQAMAQISQVKYRLP--AEAFDPVI 128

Query: 153  KPKGIEDVPIVTITLADKSDRFDQQQLTQ-VAHGLETELKRIPGTRDIYTIGGQNTIVDV 211
                 E   +  +  + K+       LT  ++  ++ +   I G   +   GGQ   + V
Sbjct: 129  LKSSGEATAVAYVGFSSKT--MPMPALTDYLSRVVQPQFASITGVSGVEVSGGQTLAMRV 186

Query: 212  RLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEVKQLVVG 271
             LDP +M   GI+  +L  +L   N  +   ++        ++V   L  V E + +VV 
Sbjct: 187  WLDPNRMAARGISAGELADALRQNNVQAAPGQVKGLYVVSNIRVNTDLVNVAEFRDMVVK 246

Query: 272  LHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAKAVEAR 331
                  V L D+ATV  G  +A  +      DG+ PA+ + +      N + + K +   
Sbjct: 247  RDGDAIVRLGDVATVELGAASADSSA---TMDGV-PAIYLGLQAAPNGNPLVIVKRIREL 302

Query: 332  LVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMGWRESIVVG 391
            L  ++  L P G++V +  +  +      + +   L  A   VVI++ L +G   ++++ 
Sbjct: 303  LPGIKQNL-PPGVEVQLPFELARFIEASIDEVQKTLLEAIAIVVIVIFLCLGSVRAVLIP 361

Query: 392  MAIIVTLMITLFASWA----WGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMGKR 447
               +VT+ +++  + A    +GF++N ++L A++ +IG++VDDAIVVVEN+HRH+  GK 
Sbjct: 362  ---VVTIPLSMLGAAALMLLFGFSINLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKS 418

Query: 448  KLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLAVA 507
            ++   +  A  EV GP I  TLT+ A   P+  + GL G          +  +++S  +A
Sbjct: 419  RVQAALIGA-REVAGPVIAMTLTLAAVYAPIGLMGGLTGSLFKEFAFTLAGAVVVSGVIA 477

Query: 508  FVLSPWLAGKFL-KAGHHQEEGKAANGIFHKIMSPFVTAPKQGRNRLFLLLTILALIAGS 566
              LSP ++   L +        +AA   FHK+ + +        +  ++     AL+  S
Sbjct: 478  LTLSPVMSSFLLPQDTTGSRMARAAEAFFHKLATGYGRLLDVSLHHRWVTGVFAALVLAS 537

Query: 567  VLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDVPEVRDYQIY 626
            +   ++ +   ++ P ++++     +  P+ ++++  ++   +       +PE     + 
Sbjct: 538  LPF-LYNSAQRELAPGEDQAMVLTAIKSPQHANIDYVEKFGKKWDEVFAALPENTGRWLI 596

Query: 627  AGTAAPINFNGLVRHYFMRNQAHQGDIQVNLLGRKERDRDSHTIASQLRPQLNEIAQRFG 686
             G+    N  G                 V L   K+R R++  I    + ++N++    G
Sbjct: 597  NGSDGVSNSIG----------------GVQLSDWKDRKRNADQIQGDTQGRMNDVE---G 637

Query: 687  GKVKVVEVP--PGPPVWSPILAEVYGPT-QEIRNEAARKVREIFRETKDIVDVDMYLPER 743
              V   ++P  PG     P+   +          EA   +++  R++   + VD  L   
Sbjct: 638  SSVFAFQLPSLPGSTGGLPVQMVIRSAADHRTVFEAMEALKKSARDSGKFIVVDSDLEFN 697

Query: 744  HEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSKYP-IPIQIQATETAK 802
            +   ++ +DR+KA  L V   SI D LA  VG   +     +   Y  IP   Q+    +
Sbjct: 698  NPTVEIRVDRAKANSLGVTMKSIGDTLAVLVGENYVNRFGMDGRSYDVIP---QSPREQR 754

Query: 803  VRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVPMVMVVGDMSGELDSPLY 862
            +  E +    V S +G   PL++LV++  +     +    L     +       + +P  
Sbjct: 755  LTAEALSRYFVKSASGQPVPLANLVQLSTS-----VGPNKLTQFNQLNASTFQAIPAPGV 809

Query: 863  GMFE-IGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDMGIAYAVGMVLIY 921
             M + + F  +E   L           +G +  W  +     +    + +A+   +V+IY
Sbjct: 810  TMGDAVAFLSEEAKKLP----------AGFSYDWQSDARQFTQEGSALVMAFVFAIVVIY 859

Query: 922  LLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGIIVRNSILL 981
            L++ AQ++S   PLII+  +P++I G +   AL        + IG++ L G+I ++ IL+
Sbjct: 860  LVLAAQYESLRDPLIILISVPMSICGALVPLALGFGTINIYTQIGLVTLIGLISKHGILM 919

Query: 982  VDFINQ-QVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFIL------DDPIFNGLA 1034
            V+F N+ Q+ +G+    ++ ++A +R +PI++T  A ++G V +L       +  F+ + 
Sbjct: 920  VEFANEIQMNKGLDRRASIEEAARIRLRPILMTTAAMVVGLVPLLFASGAGANSRFS-IG 978

Query: 1035 ISLIFGIFVSTVLTLLVIPVLYYVVMRKRFAA 1066
            + ++ G+ V T+ TL V+P +Y ++ R   AA
Sbjct: 979  LVIVVGMLVGTLFTLFVLPTMYTLLARDHRAA 1010