Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1051 a.a., Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  268 bits (685), Expect = 2e-75
 Identities = 277/1069 (25%), Positives = 473/1069 (44%), Gaps = 85/1069 (7%)

Query: 27   AAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVT 86
            A + +N     +L ++  L GLF+      +  P +D+    V    PGASP ++E+ V 
Sbjct: 5    AWSIKNPIPAAMLFVMLTLAGLFSFKQMKVQNFPDLDLPTITVVAALPGASPNQLENDVA 64

Query: 87   TPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQGVG 146
               E  ++ ++G+  IY+  Q     +   F++     +A+  + + +   +  +P    
Sbjct: 65   RIIENSLASLQGLKHIYTKVQDGTVSLTVEFRIEKNTQEALDDVRSAVAKVRSELP--TD 122

Query: 147  VGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQ-VAHGLETELKRIPGTRDIYTIGGQ 205
            + +PI+    +    ++  T++  SD+ D + L+  V + +  +L  + G   +  +GG 
Sbjct: 123  LRDPIVNKVELAGGAVLAYTVS--SDKMDAEALSWFVDNDVSKQLLSVTGVGAVSRVGGV 180

Query: 206  NTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEV 265
            +  V V LDP K+   G T   +++ L      S   R+     + P++    L   E +
Sbjct: 181  DREVQVLLDPLKLQSLGTTATDVSRQLARVQIESAGGRVDLGGSQQPLRTLSQLASAEAL 240

Query: 266  KQLVVGLHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVA 325
             ++ + L +G  + L+ IA V    +T  +       DG  P V   VA+  G + ++V 
Sbjct: 241  SKMEISLSDGRRIRLDQIAEVR---DTVAEPTAAAFLDG-KPVVGFEVARSRGASEIEVG 296

Query: 326  KAVEARLVSLENQLIPQGIDVDITRDYG-----QTAADKSNTLMGKLAFATTAVVILVLL 380
              V ARL  L+        D+ IT  +      +   D S TL+ + A     VV L L 
Sbjct: 297  DGVRARLKDLQTARP----DLKITESFDFVTPVKEEFDASMTLLYEGALLAVLVVWLFLR 352

Query: 381  TMGWRESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHR 440
             +  R +IV  +A+ ++ +      +  GFT+N V+L AL   IGILVDDAIV VENI R
Sbjct: 353  DI--RATIVSAVALPLSAIPAFIGMYYMGFTINVVTLLALSLVIGILVDDAIVEVENIVR 410

Query: 441  HMAMGKRKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGM 500
            HM MGK      +  A DE+G   I  T T+IA  LP AF++G+ G +       A++ +
Sbjct: 411  HMRMGKTPYQAAM-EAADEIGLAVIATTFTLIAVFLPTAFMAGIPGKFFKQFGWTAALAV 469

Query: 501  LISLAVAFVLSPWLAGKFLK--AGHHQEEGKAANGIFHKIMSPFVTAPKQG--------- 549
              SL VA  L+P +A   LK           A+N +            + G         
Sbjct: 470  FASLVVARALTPMMAAYILKPFVSREMPRWAASNPVTAAAWRWVNNQEEPGWLNTYQNWA 529

Query: 550  ----RNRLFLLLTILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQR 605
                R+R    L       GS++L     +    +P D+ S+ Q+ L++  G++LE+T  
Sbjct: 530  RWCIRHRWITSLGAGLFFIGSLML--IPLLPQGFIPPDDNSQTQVFLELSPGATLEQTIA 587

Query: 606  VLFEMGATLNDVPEVRDY--QIYAGTAA--PINFNGLVRHYFMRNQAHQGDIQVNLLGRK 661
                    +  VP VR     I +GTA   P    G         ++ +  + + L  R 
Sbjct: 588  TAERARLLVAAVPHVRSVYTTIGSGTAGSDPFAPQGAA-------ESRKAALTIQLDPRG 640

Query: 662  ERDRDSHTIASQLRPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAAR 721
            ER R    I +QLR  ++ +    G + KV     G       +  + G      + AAR
Sbjct: 641  ERPR-KQGIENQLREAMSNLP---GVRSKVGLGGSG----EKYILTLTGSDAHALSTAAR 692

Query: 722  KVREIFRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITY 781
             +    R  + +  +         +  V  D ++AA L V  ++I + L  A  G     
Sbjct: 693  AIERDLRTIQGVGSIQSTAALVRTEIIVTPDLARAAELGVTSSAIAETLRIATVGDYDNA 752

Query: 782  LHSEH-SKYPIPIQIQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVH 840
            L   +  +  IPI ++    A+  LE +  + V    G        V + Q    D+   
Sbjct: 753  LPKMNLPERQIPIVVKLDVGARHDLEVLNRLSVPGSKGP-------VMLGQVAQLDF--- 802

Query: 841  KNLVPMVMVVGDMSGELDSPLYGMFEI---GFALDEQMGLAQYYIHQPDGLSGVAVAWDG 897
                P V+   D +  ++      FE+   G AL +     +      +   GV+V   G
Sbjct: 803  -GGGPAVIDRYDRARNIN------FEVELAGIALGDMKTAVEKLPSLRNLPPGVSVLEIG 855

Query: 898  EWTVTYETFRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGA 957
            +  V  E F   G+A   G++ IY+++V  FK++L P+ I+A +PL++ G      L   
Sbjct: 856  DAEVQGELFASFGLAMLTGVLCIYIVLVLLFKAFLHPVTILAALPLSLGGAFVALLLANK 915

Query: 958  QFTATSMIGMIALAGIIVRNSILLVDF-INQQVEQGMAFSEAVIQSAAVRAKPIMLTALA 1016
             F+  S+IG+I L G+  +NSILLV++ I  + E G+   +A++ +   RA+PI++T +A
Sbjct: 916  SFSMPSLIGLIMLMGVATKNSILLVEYAIEARREHGLNRLDAILDACHKRARPIVMTTIA 975

Query: 1017 AMIGAVFI------LDDPIFNGLAISLIFGIFVSTVLTLLVIPVLYYVV 1059
               G + I       D    + +A+++I G+  ST L+LLVIP ++ +V
Sbjct: 976  MGAGMLPIAIGWGAADGSFRSPMAVAVIGGLITSTFLSLLVIPAVFTIV 1024



 Score = 37.0 bits (84), Expect = 8e-06
 Identities = 33/181 (18%), Positives = 74/181 (40%), Gaps = 16/181 (8%)

Query: 886  DGLSGVAVAWDGEWTVTYETFRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTI 945
            D ++ V   +D   T+ YE           G +L  L+V    +     ++    +PL+ 
Sbjct: 320  DFVTPVKEEFDASMTLLYE-----------GALLAVLVVWLFLRDIRATIVSAVALPLSA 368

Query: 946  IGVMPGHALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSA-- 1003
            I    G   +G      +++ +  + GI+V ++I+ V+ I + +  G    +A +++A  
Sbjct: 369  IPAFIGMYYMGFTINVVTLLALSLVIGILVDDAIVEVENIVRHMRMGKTPYQAAMEAADE 428

Query: 1004 -AVRAKPIMLTALAAMIGAVFILDDP--IFNGLAISLIFGIFVSTVLTLLVIPVLYYVVM 1060
              +       T +A  +   F+   P   F     +    +F S V+   + P++   ++
Sbjct: 429  IGLAVIATTFTLIAVFLPTAFMAGIPGKFFKQFGWTAALAVFASLVVARALTPMMAAYIL 488

Query: 1061 R 1061
            +
Sbjct: 489  K 489