Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1041 a.a., MdtB/MuxB family multidrug efflux RND transporter permease subunit from Erwinia tracheiphila SCR3

 Score =  287 bits (735), Expect = 2e-81
 Identities = 247/1046 (23%), Positives = 471/1046 (45%), Gaps = 74/1046 (7%)

Query: 36   TPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTPAEQVISE 95
            T LL +  LL G+ A  V P    P++D     V   +PGASP  V S VT P E+   +
Sbjct: 25   TTLLMVAILLAGILAWRVLPVSALPEVDYPTIQVVTLYPGASPDVVTSSVTAPLERQFGQ 84

Query: 96   IEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQGVGVGEPIIKPK 155
            + G+ ++ S S    ++I   F++ +  + A   +   + +  + +P  +    P+    
Sbjct: 85   MSGLKQMSSQSTGGASVITLQFQLSLKLDVAGQEVQAAINAATNLLPADLP-NPPVYSKV 143

Query: 156  GIEDVPIVTITLADKSDRFDQQQLTQVAHGLET----ELKRIPGTRDIYTIGGQNTIVDV 211
               D PI+T+ +   S       LTQV   +ET    ++ ++PG   +   GGQ   V V
Sbjct: 144  NPADPPIMTLAVTTTS-----MPLTQVQDMVETRIAQKISQVPGVGLVTLSGGQRPAVRV 198

Query: 212  RLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEVKQLVVG 271
            +L+   +   G+  + +   + +AN +S    L    +   +     +   E+ + L+V 
Sbjct: 199  KLNAQALAARGLDSETVRSVIGSANVNSAKGSLDGPERSVTLSANDQMKSAEDYRLLIVS 258

Query: 272  LHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAKAVEAR 331
              NG+PV L DIAT+  G        W   R    PA+ + V ++ G N +  A ++ A 
Sbjct: 259  YQNGSPVRLRDIATIEQGAENRWLGAWANQR----PAIVLNVQRQPGANIITTADSIRAM 314

Query: 332  LVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTM-GWRESIVV 390
            L  L   L P  +D+ +  D           +  +L  A   VV+++ L +     +++ 
Sbjct: 315  LPGLVATL-PASVDMQVLTDRTTNIRASVKDVQIELVLAIALVVMIIYLFLRNIAATLIP 373

Query: 391  GMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMGKRKLS 450
             +A+ ++L+ T    +  G+++N ++L ALI + G +VDDAIVV+ENI R++  G + L 
Sbjct: 374  AIAVPLSLIGTFAVIYFLGYSINNLTLMALIVATGFVVDDAIVVIENISRYIEKGDKPLD 433

Query: 451  ELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLAVAFVL 510
              +  +  E+G   I  T ++IA L+P+ F+  ++G       I  ++ +LIS  V+  L
Sbjct: 434  AALKGS-GEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVSILISAVVSLTL 492

Query: 511  SPWLAGKFLKAGHHQEE---GKAANGIFHKIMSPFVTAPKQGRNRLFLLLTI-LALIAGS 566
            +P +  + L A   +++    +A+  +F ++++ +     +  N  +L L++ LA +A +
Sbjct: 493  TPMMCARMLNADSLRKQNRFSRASEALFDRVIAAYGRILTKVLNHPWLTLSVALATLALT 552

Query: 567  VLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDVPEVRDYQIY 626
            VLL V   +     P  +    Q  L  P+  S E   +   ++ A +   P V     +
Sbjct: 553  VLLWVI--IPKGFFPVQDNGIIQGTLQAPQSVSYENMAQRQQQVAARIIKDPAVESLTAF 610

Query: 627  AGTAAPINFNGLVRHYFMRNQAHQGDIQVNLLGRKERDRDSHTIASQLRPQLNEIAQRFG 686
             G                 +  + G +Q+NL    ERD     +  +L+   +E+AQ  G
Sbjct: 611  IGVDG------------TNSALNSGRLQINLKPLSERDDRIQQVIKRLQ---HEVAQLPG 655

Query: 687  GKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAARKVREIFRETKDIVDVDMYLPERHE- 745
              + +       P+    +      TQ      A  +  +      ++     LP+  + 
Sbjct: 656  VDLYL------QPIQDLTIDTTVSRTQYQFTLQANTLDALSLWVPQLMAKLSALPQLQDI 709

Query: 746  --KWQ-------VVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSKYPIPIQIQ 796
               WQ       + +DR  A+ L +  A + +AL  A G + I+ ++++ S+Y + ++  
Sbjct: 710  SSDWQNRGLEAFIRVDRDSASRLGIGMADVDNALYNAFGQRLISTIYTQSSQYRVVLEHD 769

Query: 797  ATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVPMVMVVGDMSGE 856
               T  +     +++K  S NG   PLS L    Q      I H +  P      ++S  
Sbjct: 770  TRSTPGLAALDAIHLK--SSNGTVVPLSALARPEQRYGPLGINHLDQFPSTTFSFNVSN- 826

Query: 857  LDSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDMGIAYAVG 916
                       G++L++ +        +    + +   + G                   
Sbjct: 827  -----------GYSLEQAVNAISKARQELAMPAEIMTQFQGSTLAFQAALSSTVWLIIAA 875

Query: 917  MVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGIIVR 976
            +V++Y+++   ++S++ P+ I++ +P   +G +    L G +    ++IG+I L GI+ +
Sbjct: 876  IVVMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLCGNELDVIAIIGIILLIGIVKK 935

Query: 977  NSILLVDF-INQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFIL-----DDPIF 1030
            N+I+++DF +  + E+GMA  EA+ Q+  +R +PI++T LAA+ GA+ ++        + 
Sbjct: 936  NAIMMIDFALAAERERGMAPYEAIYQACLLRFRPILMTTLAALFGALPLMLSSGQGAELR 995

Query: 1031 NGLAISLIFGIFVSTVLTLLVIPVLY 1056
              L I+++ G+  S VLTL   PV+Y
Sbjct: 996  QPLGIAMVGGLIASQVLTLFTTPVIY 1021