Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1029 a.a., multidrug efflux RND transporter permease subunit MdtC from Dickeya dianthicola ME23

 Score =  279 bits (713), Expect = 9e-79
 Identities = 249/1043 (23%), Positives = 462/1043 (44%), Gaps = 73/1043 (6%)

Query: 36   TPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTPAEQVISE 95
            T LLAL   L GL    + P    PQ+D     V    PGASP  + S V TP E+ +  
Sbjct: 14   TTLLALAIALCGLIGYQLLPVSPLPQVDYPVISVTATLPGASPETMASSVATPLERSLGR 73

Query: 96   IEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQGVGVGEPIIKPK 155
            I G++++ S S      I+  F +    N A   +   + + +  +P  +    P  +  
Sbjct: 74   IAGVNEMTSTSSLGNTRIILQFALDRDINGAARDVQAAINAAQSLLPSSMP-SRPYYRKV 132

Query: 156  GIEDVPIVTITLADKSDRFDQQQLTQVAHG-LETELKRIPGTRDIYTIGGQNT-IVDVRL 213
               D PI+ ITL   SD +   QL   A   +   + +I G  D+ TIGG +   V V L
Sbjct: 133  NPSDAPIMIITLT--SDTYGPGQLYDYASTQIAQRVSQIDGVGDV-TIGGSSLPAVRVAL 189

Query: 214  DPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEVKQLVVGLH 273
            +P  +   G++LD + QS+  +N   P+  +   +  + +Q    L   +  + L+V  +
Sbjct: 190  NPQALFNQGVSLDAVRQSIAQSNVRQPLGSVDSGSTHYQIQTNDELKTADAYRSLIVHYN 249

Query: 274  NGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAKAVEARLV 333
            NG PV L D+ATV   V    QNV         PAV + + +    N +    A+ A + 
Sbjct: 250  NGAPVRLSDVATVKDSV----QNVLNAGMTNAKPAVLVMIRRAPDANIISTVDAIRASMP 305

Query: 334  SLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTM-GWRESIVVGM 392
             L+  L+P  I +++ +D   T       +   L  A + V+++V L +   R +++  +
Sbjct: 306  ELQ-ALLPASITLNVAQDRSPTIRASLRDVERSLTIAVSLVILVVFLFLRSGRATLIPAI 364

Query: 393  AIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMGKRKLSEL 452
            A+ V+L+ T  A +  GF+LN +SL AL  + G +VDDAIVV+ENI RH+  G + L   
Sbjct: 365  AVPVSLIGTFSAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENISRHIEAGMKPLQAS 424

Query: 453  IPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLAVAFVLSP 512
            +   V EVG   +  +L++IA  +P+ F+ GL G       I  S+ +LISL V+  L+P
Sbjct: 425  L-QGVREVGFTVVSMSLSLIAVFIPLLFMDGLPGRLFREFSITLSVAILISLLVSITLTP 483

Query: 513  WLAGKFLKAGHHQEEGKAANGIFHKIMSPFVTAPKQGRNR---------LFLLLTILALI 563
             +  + L+   H    +     F++++       +QG  R          ++++ +L  I
Sbjct: 484  MMCARLLRL--HTPRSQPRTRGFNRLL----LGLQQGYGRSLRWVLNHSRWVMMVLLCTI 537

Query: 564  AGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDVPEVRDY 623
              SV L  + ++     P  +       +   +  S +  +R L +    +   P V + 
Sbjct: 538  GLSVWL--YISIPKTFFPEQDTGRLMGFIQADQSISFQAMKRKLQDFMTIVRADPAVDNV 595

Query: 624  QIYAGTAAPINFNGLVRHYFMRNQAHQGDIQVNLLGRKERDRDSHTIASQLRPQLNEIAQ 683
              + G                  + + G + ++L    +RD  +  + ++LR  L   A+
Sbjct: 596  TGFTGGM----------------RTNSGSMFISLKPLAQRDVSAQQVITRLRANL---AK 636

Query: 684  RFGGKVKVVEVPP----GPPVWSPILAEVYGPTQEIRNEAARKVREIFRETKDIVDVDMY 739
              G  + ++ V      G          +      +      K+R+   +   + DV   
Sbjct: 637  EPGANLYLMAVQDVRIGGREANGGYQFSLLSDDLAVLRTWEPKIRDALSKLPQLADVSSD 696

Query: 740  LPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSKYPIPIQIQATE 799
              ++  +  +V DR   A L +  AS+   L  A G + I+ ++   ++Y + +++ +  
Sbjct: 697  QQDKGAELMMVYDRDAMARLGINVASVNALLNNAFGQRQISTIYQPMNQYKVVMEVDSAY 756

Query: 800  TAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVPMVMVVGDMSGELDS 859
            T       +  M V + +G   PLS     +       + H+ L         +S  L  
Sbjct: 757  TQDP--SSLDKMFVINNDGKPIPLSFFARWQPANAPLAVNHQGL----SAAATLSFNLPE 810

Query: 860  PLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDMGIAYAVGMVL 919
                + +   A++  M   +         +G A+A+        ++     +     ++ 
Sbjct: 811  GA-SLSDATTAIERTMTTLRVPSTVRGQFAGTALAFQ-------QSQHSQVVLIIAAILT 862

Query: 920  IYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGIIVRNSI 979
            +Y+++   +++   PL I++ +P   +G +    L G  F+  ++IG++ L GI+ +N+I
Sbjct: 863  VYIVLGILYENVAHPLTILSTLPSAGVGALLALELFGKPFSLIALIGILLLIGIVKKNAI 922

Query: 980  LLVDF-INQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFIL-----DDPIFNGL 1033
            ++VDF +  Q E  +   EA+ ++  +R +PIM+T +AA+ GA+ ++        +   L
Sbjct: 923  MMVDFALVAQREGKLPAREAIFRACMLRFRPIMMTTMAALFGALPLVLSNGDGSELRQPL 982

Query: 1034 AISLIFGIFVSTVLTLLVIPVLY 1056
             I+++ G+ +S +LTL   PV+Y
Sbjct: 983  GITIVGGLVMSQLLTLYTTPVVY 1005



 Score = 53.9 bits (128), Expect = 6e-11
 Identities = 37/164 (22%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 905  TFRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSM 964
            + RD+  +  + + L+ L+V    +S    LI    +P+++IG      L G      S+
Sbjct: 330  SLRDVERSLTIAVSLVILVVFLFLRSGRATLIPAIAVPVSLIGTFSAMYLCGFSLNNLSL 389

Query: 965  IGMIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFI 1024
            + +    G +V ++I++++ I++ +E GM   +A +Q   VR     + +++  + AVFI
Sbjct: 390  MALTVATGFVVDDAIVVLENISRHIEAGMKPLQASLQ--GVREVGFTVVSMSLSLIAVFI 447

Query: 1025 -------LDDPIFNGLAISLIFGIFVSTVLTLLVIPVLYYVVMR 1061
                   L   +F   +I+L   I +S ++++ + P++   ++R
Sbjct: 448  PLLFMDGLPGRLFREFSITLSVAILISLLVSITLTPMMCARLLR 491