Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  272 bits (696), Expect = 8e-77
 Identities = 254/1075 (23%), Positives = 472/1075 (43%), Gaps = 81/1075 (7%)

Query: 17   ESRLGISGRIAAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGA 76
            ESR  +S   A A +  A+T  L  +  + G+ A     + E+P   +    +   +PGA
Sbjct: 3    ESRFNLS---ALAVRERAITLFLIFLIFVAGVLAFFQLGRAEDPPFTIKQMTIITAWPGA 59

Query: 77   SPREVESLVTTPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYN---K 133
            + +E++  V  P E+ + E+   D+  ++++P  A  +   K   P ++     Y    K
Sbjct: 60   TAQEMQDQVAEPLEKRLQELRWYDRTETYTRPGLAFTMLSLKDSAPPSEVQEEFYQTRKK 119

Query: 134  LYSNKDWMPQGVGVGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHGLETELKRI 193
            +      +P GV VG PII  +   DV      L  K +   Q+ L + A  L  +L  +
Sbjct: 120  MGDEAKKLPAGV-VG-PIINDE-YADVTFALFALKAKGE--PQRLLVRDAEALRQQLLHV 174

Query: 194  PGTRDIYTIGGQNTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPV 253
            PG + +  IG Q   + V     ++   G+T   +  +L   N  +P   +     +  V
Sbjct: 175  PGVKKVNIIGEQPERIFVSFSHDRLATLGVTPQDIFAALNNQNVLTPAGSIETKGPQVFV 234

Query: 254  QVGQFLTRVEEVKQLVVGLHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAV 313
            +V      +E+++Q  + +  G  + L D+ATV  G    +  +    R+   PA+ + V
Sbjct: 235  RVDGAFDNLEKIRQTPI-VAQGRTLKLSDVATVERGYEDPSTFMV---RNNGEPALLLGV 290

Query: 314  AKKGGENAVDVAKAVEARLVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTA 373
              +   N + + +A+EA + ++ N  +P G+ +    D     +   +  M K   A   
Sbjct: 291  VMRDDWNGLKLGQALEAEVTNI-NATLPLGMTLSKVTDQAVNISSAVDEFMVKFFVALLV 349

Query: 374  VVILVLLTMGWRESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIV 433
            V+++  L+MGWR  IVV  A+ +TL        A G   +R++L +LI ++G+LVDDAI+
Sbjct: 350  VMMVCFLSMGWRVGIVVAAAVPLTLAAVFVIMAASGKNFDRITLGSLILALGLLVDDAII 409

Query: 434  VVENIHRHMAMGKRKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIP 493
             +E +   M  G  ++ +    A      P +  TL      +P  F     G Y S + 
Sbjct: 410  AIEMMVVKMEEGYSRI-KASAYAWSHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMF 468

Query: 494  INASMGMLISLAVAFVLSPWLAGKFL------KAGHHQEEGKAANGIFHKIMSPFVTAPK 547
                + ++ S  VA   +P+L  K L      + GH           F +++   +    
Sbjct: 469  WIVGIALIASWVVAVAFTPYLGVKMLPDIKKVEGGHDAIYNTRNYNRFRQVLGHVIA--- 525

Query: 548  QGRNRLFLLLTILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVL 607
                +  +  T++ L   SVL     AV  +  P  ++ E  + + MP G+S+E+T    
Sbjct: 526  ---RKWIVAGTVITLFVVSVL--GMGAVKKQFFPTSDRPEVLVEVQMPYGTSIEQTSIAT 580

Query: 608  FEMGATLNDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGD---IQVNLLGRKERD 664
             ++ A L    E      Y G  AP         +F+       D    ++ +L   +++
Sbjct: 581  AKVEAWLAQQKEASIVTSYIGQGAP--------RFFLAMSPELPDPSFAKIVVLAGNDKE 632

Query: 665  RDS------HTIASQLRPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNE 718
            R++        IA  L P+          +V+V ++  GPP   P+   V GP  +    
Sbjct: 633  RETLKFRLREAIAGGLAPE---------AQVRVTQIVFGPPSPFPVAYRVMGPDPDKLRA 683

Query: 719  AARKVREIFRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKP 778
             A +V  + R +  +  V+     R       +++ +   + +   S+   L   + G P
Sbjct: 684  IADEVGTVMRASPMMRTVNTDWGPRVPTLHFTLNQDRLQAVGLTSNSVSSQLQFLLSGIP 743

Query: 779  ITYLHSEHSKYPIPIQIQATETAKVRLE--QVLNMKVGSPNGHAYPLSDLVEVRQTRMDD 836
            +T +  +       +Q+       +RL+  ++ +  +    G   PLS +  V   RM+D
Sbjct: 744  LTEVREDIRS----VQVVGRAAGDIRLDPARIADFTLVGSAGQRIPLSQVGSV-DVRMED 798

Query: 837  YIVHK-NLVPMVMVVGDMSGELDSPLYGMFEIGFALDEQMGLAQYYIHQP--DGL-SGVA 892
             I+ + +  P + V GD++  L  P     ++  A+  Q+        QP  D L SG  
Sbjct: 799  PILRRRDRTPTITVRGDIAEGLQPP-----DVSTAVMTQL--------QPIIDRLPSGYR 845

Query: 893  VAWDGEWTVTYETFRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGH 952
            +   G    + +    M   + + + L  L+++ Q +S    +++    PL +IGV+P  
Sbjct: 846  IEQAGSIEESAKATEAMLPLFPIMIALTLLIIILQVRSMAAMVMVFLTSPLGLIGVVPTL 905

Query: 953  ALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIML 1012
             L    F   +++G+IAL+GI++RN+++L+  I+   ++G+    AV+++   RA+P++L
Sbjct: 906  LLFQQPFGINALVGLIALSGILMRNTLILIGQIHHNEQEGLDPFRAVVEATVQRARPVIL 965

Query: 1013 TALAAMIGAVFILDDPIFNGLAISLIFGIFVSTVLTLLVIPVLYYVVMRKRFAAH 1067
            TALAA++  + +     +  LA +LI G    TVLTL+ +P +Y +  + R   H
Sbjct: 966  TALAAILAFIPLTHSVFWGTLAYTLIGGTLAGTVLTLVFLPAMYSIWFKIRTVRH 1020