Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., efflux RND transporter permease subunit from Dickeya dadantii 3937

 Score =  294 bits (753), Expect = 2e-83
 Identities = 260/1044 (24%), Positives = 476/1044 (45%), Gaps = 53/1044 (5%)

Query: 27   AAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVT 86
            A A  +  +     LV +  G+ +    P+ E+P   +  A V   +PGA+ ++  S VT
Sbjct: 13   AWALAHQQLVAFFMLVIVAAGVMSYERLPRNEDPAFTIKTAVVSASWPGATVQDTVSFVT 72

Query: 87   TPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQ-GV 145
               E+ + E   +D I S+S+P  A+I    +   P ++     Y      KD  P    
Sbjct: 73   DVLEKKLQETPYLDFIESYSRPGEAVIFVNLRDSTPPSEVPGIWYTVRKKMKDITPSLPD 132

Query: 146  GVGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHGLETELKRIPGTRDIYTIGGQ 205
            GV EP +  +  +    +       +D +  ++L      + TEL   P    I  +G Q
Sbjct: 133  GVSEPAVNDEFDDTFGTI---YGFTADGYSPRELRDKVDDIRTELLATPDVGKIDVLGVQ 189

Query: 206  NTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEV 265
               + V   P ++ G G+ L Q+  +L A N  SP   +   N +  ++V       E +
Sbjct: 190  EEQIVVAFSPRQLAGMGLDLQQVTAALQAQNAVSPTGTIRTANDKVELRVSGAFVSEESL 249

Query: 266  KQLVVGLHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVA 325
            +Q+ + +  G  + L DIATV      A +      R    PA+ +A++     N +D  
Sbjct: 250  RQVTLRI-GGRFIPLTDIATVH---RQAAEPPAPAFRVNGQPAIGLAISMAPTGNMLDFG 305

Query: 326  KAVEARLVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMGWR 385
            +A+  ++ ++   L P GI+V    D         +  +  L  A   V+ +  +++G R
Sbjct: 306  QALRGKMATISASL-PHGIEVTNVADQSSVVKSSVSGFVKVLLEAVVIVLAVSFVSLGSR 364

Query: 386  ESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMG 445
              +VV  +I + L +T       G  L R+SL ALI ++G+LVDDA++ VE +   +  G
Sbjct: 365  AGLVVAASIPIVLAMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSSLEKG 424

Query: 446  KRKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLA 505
            + +  +    A +    P +  TL +IA  +P+ F +   G Y   + I   + +L S  
Sbjct: 425  EAR-EQAATRAYETTAFPMLTGTLVMIAGFIPVGFAASSAGEYCYSLFIVVLISLLSSWV 483

Query: 506  VAFVLSP----WLAGKFLKAGHHQEEGKAANGIFHKIMSPFVTAPKQGRNRLFLLLTILA 561
            VA + SP    WL  K +KA H    G+ +   + +++S   TA +     L L + +LA
Sbjct: 484  VAVLFSPLIGVWLLPKTMKA-HDHNAGRLSRA-YDRLLS---TALRYRGRTLLLSVALLA 538

Query: 562  LIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDVPEVR 621
            L   +        +  +  P  ++ E  + L +P  ++ E T+R +  +  +L + P++ 
Sbjct: 539  LAVWAA-----GRLEGEFFPASDRPELLVSLTLPRNATQEATEREVVRLEQSLKNDPDLD 593

Query: 622  DYQIYAGTAAPINFNGLVRHYFMRNQAHQGDIQVNLL----GRKERDRDSHTIASQLRPQ 677
             +  Y G       +G VR Y   +   Q +    L+    G KERD     + ++L  +
Sbjct: 594  HFSTYVG-------SGAVRFYLPMDVLLQNENIAQLVVVAKGLKERD----ALRARLEKR 642

Query: 678  LNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAARKVREIFRETKDIVDVD 737
            L +       +V  +E+  GPPV  P+   V GP  +   E A  +  +     D  +V+
Sbjct: 643  LQQDFSHLVTRVSPLEL--GPPVGWPLKYRVTGPDIDKVREYATGLATLIGNNPDAREVN 700

Query: 738  MYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSKYPIPIQIQA 797
            +   E     +V +++++A  + +    +  ALAT   G  +T +   +    + + ++A
Sbjct: 701  LTAGEPERAIRVGVNQTEARAVGISSQDVASALATIFSGSAVTSVRDRNRM--VAVVVRA 758

Query: 798  TETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVPMVMVVGDMSGEL 857
             +  +  L+ V ++++ + NG   PL  +  V     +  I  +  +P + V  D++  +
Sbjct: 759  RDEERQNLDTVASLQLRAANGQRVPLGQIASVGYGVDEPIIWRRQRLPFITVQTDLAPGV 818

Query: 858  DSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDMGIAYAVGM 917
             +              Q  L   Y H  +G   VA +  G  +V Y+      +   + +
Sbjct: 819  RAQTLSTTLAPQVAAYQASLPAGY-HIEEG-GSVAESNKGNNSV-YQV-----LPVTLLV 870

Query: 918  VLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGIIVRN 977
            +LI L+V  Q  S ++  ++MAP  L  IGV+      G      +++G+IALAG+I+RN
Sbjct: 871  MLILLMVQLQRFSRMMLALLMAPFGL--IGVVAAMLPTGTPMGFVALLGVIALAGMIIRN 928

Query: 978  SILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFILDDPIFNGLAISL 1037
            +++L+  ++     GM  +EA+I +A  R++PI+LTALAA++G + I     +  +A ++
Sbjct: 929  AVILISEVDTNTAAGMPINEAIIHAARHRSRPILLTALAAILGMIPIATQVFWGPMAYAI 988

Query: 1038 IFGIFVSTVLTLLVIPVLYYVVMR 1061
            I G+ V+T+LTL V+P    +VM+
Sbjct: 989  IGGLIVATLLTLTVLPAAISLVMQ 1012