Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1056 a.a., efflux RND transporter permease subunit from Phocaeicola dorei CL03T12C01

 Score =  294 bits (753), Expect = 2e-83
 Identities = 260/1055 (24%), Positives = 483/1055 (45%), Gaps = 70/1055 (6%)

Query: 29   AFQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTP 88
            A +   MT L  L   + GLF++   P +  P ID     V   + GAS  ++E+ VT P
Sbjct: 7    AVKKPIMTSLCFLAVAIFGLFSLSKLPVDLYPDIDTNTIMVMTSYQGASASDIENNVTRP 66

Query: 89   AEQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVVRIYNKLYSNKDWMPQGVGVG 148
             E  ++ +  +  I S S  + ++I   F+ G   +     + +KL      +P  V   
Sbjct: 67   LENTLNSVSNLKHITSKSSENISVITLEFEYGYDIDVLTNDVRDKLDMVSSQLPDEVNT- 125

Query: 149  EPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAH-GLETELKRIPGTRDIYTIGGQNT 207
             PII     + +PI+ +++  +     Q  L ++    +   L R+PG   +   G    
Sbjct: 126  -PIIFKFSTDMIPILLLSVQAEES---QPALYKILDDNVVNPLARVPGVGTVSIAGAPKR 181

Query: 208  IVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEVKQ 267
             V++  DP K+  + +T++ ++  + A N+++P       +  + ++V       +E++ 
Sbjct: 182  EVNIYCDPNKLEAYDLTIETISSIVGAENKNTPGGTFDVGSNTYSLRVEGEFKDPKEMEN 241

Query: 268  LVVGLHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAKA 327
            +VVG  NG  VYL D+ATV   V    Q  +    +G+  A+ I V K+ G N+V++++ 
Sbjct: 242  IVVGTRNGASVYLRDVATVVDSVEERAQETYN---NGVQGAM-IVVQKQSGANSVNISQK 297

Query: 328  VEARLVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMG-WRE 386
            V  +L  L+  L P  + + +  +      +  ++L   + +A   VV++V + +G WR 
Sbjct: 298  VMDQLPKLQKSL-PSDVKLGVIVNTSDNILNTIDSLTETIMYAILFVVLVVFVFLGRWRA 356

Query: 387  SIVVGMAIIVTLMITLFASWAW-----GFTLNRVSLFALIFSIGILVDDAIVVVENIHRH 441
            +++    I +T+ ++L AS+ +     G +LN +SL  L  +IG +VDDAIVV+EN+  H
Sbjct: 357  TVI----ICITIPMSLIASFIYLAITDGGSLNIISLSCLSIAIGNVVDDAIVVLENVTTH 412

Query: 442  MAMGKRKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGML 501
            +  G       I    +EV    I +TLT+IA   P+  VSG+ G     +     + M 
Sbjct: 413  IERGSEPKQAAIH-GTNEVAISVIASTLTMIAVFFPLTMVSGMSGVLFRQLGWMMCVIMT 471

Query: 502  ISLAVAFVLSPWLAGKFLKAGHHQEE---------GKAANGIFHKIMSPFVTAPKQGRNR 552
            IS   A   +P +  + L+    Q +          +A +G+ +        A +  R  
Sbjct: 472  ISTISALSFTPMMCAQMLRLQKKQSKCFVTFYKPIERALDGLDNWYQKRLNWAVRHRR-- 529

Query: 553  LFLLLTILALIAGSVLLPVFQA--VVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEM 610
                 TI+A   G  LL +  A  +  +  P  + S   + L +P G+ +E+ Q +  E+
Sbjct: 530  -----TIIAGCFGFFLLSLICAKGIGTEFFPSQDNSRISVQLQLPIGARVERAQALAQEL 584

Query: 611  GAT----LNDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGDIQVNLLGRKERDRD 666
                      V  + +Y +  G A   N    ++     N +H     +NL    +R   
Sbjct: 585  TEKWLKKYEGVMRICNYTV--GQADADNTWASIQD----NGSHIISFNINLYNPDQRSVT 638

Query: 667  SHTIASQLRPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAARKVREI 726
               +   +R  L    +    +V +     G    +    E+YG      ++AA +++E 
Sbjct: 639  LAEVCDGMREDLKAYPELDKAQVILGGSSGGMGGQATADFEIYGYDFTETDKAAAELKEA 698

Query: 727  FRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEH 786
              +   + +V++   +   ++QV  DR K A   +  ++    L   V G   +Y   + 
Sbjct: 699  LLKVNGVSEVNISRQDYQPEYQVDFDREKLALHGLNLSTAALYLRNRVNGALSSYYREDG 758

Query: 787  SKYPIPIQIQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVHKNLVPM 846
             +Y I  +++     +  +E + N+ + +  G A  + D+  V +      I  K+   +
Sbjct: 759  DEYDI--KVRYAPQFRTSIESLENILIYTNEGKAIRVKDIGTVVERSAPPTIERKDRERI 816

Query: 847  VMVVGDMSGELDSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETF 906
            V V   +SG   +PL  +   G ++ ++M L           SG+++   G +    ++F
Sbjct: 817  VTVSAVISG---APLGSVVVAGESIIDKMDLP----------SGISIQVAGSYEDQQDSF 863

Query: 907  RDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIG 966
             D+G    + ++L+++++ AQF+S   P IIM  IP    GV+      G      S++G
Sbjct: 864  SDLGTLAVLIIILVFIVMAAQFESLTYPFIIMFSIPFAFSGVLMALYGTGTTLNVMSLLG 923

Query: 967  MIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFIL- 1025
             I L GI+V+N I+L+D+I    E+GM+   +V+ S   R +P+++T L  ++G V +  
Sbjct: 924  GIMLIGIVVKNGIVLIDYITLCRERGMSVIHSVVVSGRSRLRPVLMTTLTTILGMVPMAI 983

Query: 1026 ----DDPIFNGLAISLIFGIFVSTVLTLLVIPVLY 1056
                   ++  L +S+I G+ VSTVLTL+++PVLY
Sbjct: 984  GGGEGSEMWQPLGVSVIGGLTVSTVLTLILVPVLY 1018