Pairwise Alignments

Query, 1067 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1015 a.a., Swarming motility protein SwrC from Alteromonas macleodii MIT1002

 Score =  277 bits (709), Expect = 2e-78
 Identities = 245/1037 (23%), Positives = 467/1037 (45%), Gaps = 46/1037 (4%)

Query: 30   FQNSAMTPLLALVGLLMGLFAVMVTPKEEEPQIDVTFADVYIPFPGASPREVESLVTTPA 89
            F+   ++ ++A++  + G+   +   + E P+  +  A V   +PGA+P +VE  VT   
Sbjct: 6    FRQKVISWMVAIILGVGGIVTFLGLGQLEFPEFTIRNALVITQYPGATPEQVEEEVTLQL 65

Query: 90   EQVISEIEGIDKIYSFSQPDGAMIVAIFKVGVPRNDAVV---RIYNKLYSNKDWMPQGVG 146
            E+ I  I  + +I S +    + I    K  V   D       +  K+   +  +P G  
Sbjct: 66   EKAIQRIPNVKRISSVNMVGLSQITVELKSSVQAKDLEQYWDNLRRKVGDAQASLPPGTS 125

Query: 147  VGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLTQVAHGLETELKRIPGTRDIYTIGGQN 206
                 I      DV  + +TL  KS+ +  +Q+   A  ++ E++ + G + +   G  N
Sbjct: 126  TS---IVNDDFGDVFGLLLTL--KSEDYSLKQMEDFADLMQREIQLVDGVKKVSIAGTVN 180

Query: 207  TIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSPMLRLTHDNQEFPVQVGQFLTRVEEVK 266
              + V LD  KM    ++ + +   L A N       +    +   +Q       +E + 
Sbjct: 181  EQIIVSLDHDKMKTLNVSAESIAGLLTAQNVVGNAGSIKVQGKRLSIQPTGEFDNLEALG 240

Query: 267  QLVVGLHNGTPVYLEDIATVSFGVNTATQNVWTGDRDGIHPAVTIAVAKKGGENAVDVAK 326
            Q+V+G      + L DIAT+   +N     ++        PA++I V+     N VDV K
Sbjct: 241  QVVIGSPASGLIRLTDIATIERKLNDTPSILYHSSGT---PALSIGVSFASAVNVVDVGK 297

Query: 327  AVEARLVSLENQLIPQGIDVDITRDYGQTAADKSNTLMGKLAFATTAVVILVLLTMGWRE 386
             +++++  LE Q +P G+ +D   +      D     +  L  A   V+ ++LL MGWR 
Sbjct: 298  RLDSKIAELE-QRMPLGMTLDTVYNQPTVVDDSVTGFLINLVEAVAIVIFVLLLFMGWRS 356

Query: 387  SIVVGMAIIVTLMITLFASWAWGFTLNRVSLFALIFSIGILVDDAIVVVENIHRHMAMGK 446
             +++G+ +++T++ T       G  L ++SL ALI ++G+LVD+AIVV E +   +  G+
Sbjct: 357  GVLMGLILVLTILGTFILMSVKGIELQKISLGALIIALGMLVDNAIVVTEGMLIGVRKGQ 416

Query: 447  RKLSELIPPAVDEVGGPTILATLTVIAALLPMAFVSGLMGPYMSPIPINASMGMLISLAV 506
             KL +     V + G P + AT+  I A  P+       G ++  +       + +S   
Sbjct: 417  TKL-QAAKDVVSQNGLPLLGATVIAITAFAPIGLSPDATGEFVGSLFWVLCFSLFLSWIT 475

Query: 507  AFVLSPWLAGKFLKA----GHHQEEGKAANGIFHKIMSPFVTAPKQGRNRLFLLLTILAL 562
            A  ++P+      K     G + E+     GI   +    +TA     +R   ++ +L  
Sbjct: 476  ALTITPFFFDLLFKTEKERGANDEDDDPYKGIIFTVYKRVLTAAIN--HRYVTIVLVLVA 533

Query: 563  IAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSLEKTQRVLFEMGATLNDVPEVRD 622
            + GS+    F  V     P  +   F + L +PEGS +  T++ +  +   +  +  + +
Sbjct: 534  LVGSMASGKF--VKNAFFPDSSTPLFFVDLWLPEGSDILTTEQSIRRLEDNVLGMENIAN 591

Query: 623  YQIYAGTAAPINFNGLVRHYFMRNQ-AHQGDIQVNLLGRKERDRDSHTIASQLRPQLNEI 681
                 G  A      L   Y   ++ A  G + V     + RD     I   +R     +
Sbjct: 592  VTSVIGGGA----QRLTLTYAPEDRYASYGQLIVETDTVESRDARMREIIELVREDFPNV 647

Query: 682  AQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAARKVREIFRETKDIVDVDMYLP 741
                  KVK ++V  GP   + I A +YGP  E+  E +  +  IF+  K +  V +   
Sbjct: 648  QY----KVKALQV--GPSAKAAIEARIYGPEPEVLREISSDIEAIFQAEKTMDSVRLSWS 701

Query: 742  ERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPITYLHSEHSKYPIPIQIQATETA 801
             +    + V    +A  + V   ++  A      G+ +  L+ E S   IPI ++     
Sbjct: 702  NKVPFVEPVFLEEQARRIGVTRDAVHTAFLLNNEGETVG-LYREGSDL-IPIVMRNDPNQ 759

Query: 802  KVRLEQVLNMKVGSPNGHAY-PLSDLVEVRQTRMDDYIV-HKNLVPMVMVVGDMSGELDS 859
            +  ++ + ++ V S     Y  ++D++      +D+ I+  +N V M+ V  +       
Sbjct: 760  RYDIDNLASLNVWSQEQGKYISMADVISNVDVSLDNPIIKRRNRVRMLAVYAE-----PM 814

Query: 860  PLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWTVTYETFRDMGIAYAVGMVL 919
            PL G  E   ++  ++      +  PDG     + W GE+  + +    +  +  +G++ 
Sbjct: 815  PLSG--ETAASVQAKVRPLVEELQLPDGYH---IEWGGEYETSTDAQSALFASMPIGILG 869

Query: 920  IYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFTATSMIGMIALAGIIVRNSI 979
            ++++ V  F      L I   IPLT IG++ G  L+GA FT  +++G ++L G++++N I
Sbjct: 870  MFIITVLLFGKLRQALAIWGVIPLTTIGIIGGLVLVGAPFTFMALLGSLSLIGMVLKNGI 929

Query: 980  LLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIGAVFILDDPIFNGLAISLIF 1039
            +L++ IN Q +      +AV+ ++  R +P+ + A+  ++G + +  D  F  +A+ ++F
Sbjct: 930  VLMEEINVQAKGNSGAFDAVVAASVSRVRPVSMAAITTILGMIPLFSDAFFASMAVVIVF 989

Query: 1040 GIFVSTVLTLLVIPVLY 1056
            G+ V+TVLTLL++PVL+
Sbjct: 990  GLTVATVLTLLILPVLH 1006