Pairwise Alignments

Query, 346 a.a., AbrB family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  167 bits (423), Expect = 4e-46
 Identities = 112/331 (33%), Positives = 184/331 (55%), Gaps = 13/331 (3%)

Query: 14  LIIAAVAAGTGTLLS---IPLSEMFIASGLVIVLHKKRWLTIHTPPWLLLFVQVVLGISV 70
           ++   +AAG G LL    +P   + + S +V  L   +       P+ L ++QV LGI+ 
Sbjct: 4   IVCLLIAAGFGALLQFEGVPHG-LLLGSIVVTALFASKTGIAPATPYGLGYIQVTLGIAT 62

Query: 71  GATISL--SELGTTLTLPVIVGLVCCLTLQIISSYLWLTKKEGWTPFESLLGAVPGAMAA 128
           G       SE  TT+ LP +V L+ CLT+QI  +  WLT+  GW   ++LL   PGA+AA
Sbjct: 63  GLMFEAWDSETATTM-LPSLVVLLICLTVQIALAGWWLTRGAGWNRTDALLAVYPGALAA 121

Query: 129 ILVISESSEKPSAKVVYSHSVRLMILTLL-ALLISNSAPDSASVDGSLTVYAWLIFLALA 187
           +  + ES EK S+KV+  H +RL+++T+L +LLI   A  +      LT    L   ++ 
Sbjct: 122 VFDLLES-EKASSKVIIVHLMRLLLITVLVSLLIPGQAAVAEVASDPLTTGMALTAFSVI 180

Query: 188 LMSLLLGKASTLLGIPAPYMLAALLITASF--NGFATGIDMQLPKWMVIFATALLGILIG 245
            +S+LLG+   L+G+PAP+ML A+LITA F  +G+  G  M  P+W +  A  +LG+ IG
Sbjct: 181 ALSVLLGRLLLLVGVPAPFMLTAILITAVFVKSGWLHGFHM--PEWSLNLAALILGVRIG 238

Query: 246 SRIADTTLREAMAYSRAGVMVTMIGLLVAVGVSGVFSILIDKSWVVLLLSWVPGSVEAMT 305
           SR     + E   + R  ++   + ++VA   + V +  +    + L L+++PG++E + 
Sbjct: 239 SRFQGLGIAELARHGRTALVSVGLMIVVAAAFAEVAARWLGSDPLSLWLAYMPGAIETIA 298

Query: 306 AVALLLGMEPAFVMINHALRLLLLYSLPAML 336
            VA   G+   F++ +H  R++LL+  PA+L
Sbjct: 299 IVAFGGGLNVVFILTHHLSRMVLLHFAPALL 329