Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 885 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score =  124 bits (311), Expect = 2e-32
 Identities = 185/780 (23%), Positives = 292/780 (37%), Gaps = 123/780 (15%)

Query: 80  RSDLDKVRGIANADIFSGITSVQSNNMHNEAGALDIGIRGVQGEGRVPIFIDGSLQSTHT 139
           R  LD+      A++      V S     + G L + IRG+Q  GRV + +DG  Q+   
Sbjct: 152 REQLDRNPPRHAAEMLEEAPGVYSAVSQQDPG-LSVNIRGIQDYGRVNMSVDGMRQNYQQ 210

Query: 140 SRGYQGVSDRTYIDTDLLSSLTVNKGATIESSPYASGAVGGVVNATTLGIKDIIKDDQAF 199
           S G+Q  +   Y+D++LLS + + KGAT  S+   +G +GGV N  T+   D++KD +  
Sbjct: 211 S-GHQQRNGTLYVDSELLSEVVIEKGAT--STMGGAGVIGGVANFRTVEAADLLKDGKEI 267

Query: 200 GVVLKARANNHNRTPDVSGDYSEQGQYALDERGEHSAFKHGSLMLGLGYQAESFNTVLAY 259
           G  ++       R+                  G H     GS    +G   + ++ +LA 
Sbjct: 268 GGRIRVTTGLGGRS-----------------NGTHFI---GSSAFAVG--TDVWDMLLAA 305

Query: 260 SKRSKGNHFAGKKG-----------YEEYQEPVVGQGQEVVNTSFESDSWLFKLASDTGT 308
           S+R  G++  G KG               QE +  +   V  +     S L KL  +   
Sbjct: 306 SERHLGDYNPGTKGSIGDLRTGTSFLPNSQERI--KNTTVAYSGSVMRSRLLKLGINLPV 363

Query: 309 AHNADFNYRHHAQKAGEVLMAYWYKSSEDWEGNPYPDGKDRMPQWGLGTAKVNTYSANYY 368
                 +Y   A    +V M    K ++ WE            + G         + +Y 
Sbjct: 364 DQRLQLSYLTTAVGYDDVNMMSAEK-AQLWE------------KLGSSDVTAQNVALDYS 410

Query: 369 YQPDHPWLNLNANFWYTEADLAQYNGLWALGTNAEQYFHAYHNDRSGLSLTNET---LLT 425
           Y PD+P ++  A  +Y +    Q         +++ Y   Y  +  G    N +   L  
Sbjct: 411 YTPDNPLIDFKAKLYYVDTRNDQST---LTRGSSKGYEVTYQTNTYGFQAQNMSTFALSE 467

Query: 426 QWPVRLNYGLAQQNERLSPEEDGQTRFTKTVTSR-------HGKRTAQNLFANADIDYS- 477
              ++ NYGL    +++ P+ +        VT+         G R   +LF   D DY  
Sbjct: 468 LSVIKANYGLEFFYDKVRPDSNQMVASDSAVTASAAESVTPKGDRAMGSLFTRLDYDYDN 527

Query: 478 -------------PLRVQLGLNLHN-AKSTDYQTKQQLDY---KEKLDLLSEFTYALTPS 520
                         LR + GLN       T  Q    + Y   +E+      F  ++ P 
Sbjct: 528 WLNLNAGLRYDRYRLRGETGLNTRTFIIGTTRQVGLPMTYDVDREEGHFSPTFGLSIKPG 587

Query: 521 T---QLFLKSSRTYRMPSLYETTLS-------NEVFSYNPYNPIKPEQAWNNEVGVQFMA 570
               QLF    + +R P++ ET +S       +E    NP+  +KPE +   EVG   + 
Sbjct: 588 VDWLQLFATYGKGWRPPAVTETLVSGRPHGGGSESIFPNPF--LKPETSTAWEVGFNVLK 645

Query: 571 SNSVLQDDRLNLSVSYFRNSIKDFISGGRLAKTPGMSEWQ-ANFTF-TNYDKLQLSGWEL 628
            + +  DDR  + VSYF   + DF       + PG       N  +  N +  +  G E 
Sbjct: 646 EDLLFADDRAGMKVSYFNTRVDDFSYMALGVQPPGYGIANIGNAAYVNNLETTRFRGLEY 705

Query: 629 GAHYQYAWLYTHFAAT-LYSETKICS----------VQQAQYAES--------DTCNS-L 668
              Y   + Y  F  T +    + CS          +Q+   + +        D  N+  
Sbjct: 706 QLDYDAGFAYGQFNYTRMLGSNRFCSKTAWLGGVTKIQKGPGSRAPVTAMVPDDVANAGQ 765

Query: 669 GFAWGLTPTRIPPKQNLYLNVGTKFFNDTLDSGVKVSYHSGKSNPSDWLAGTAANPILEI 728
           G +  L  +   P       +G +FF   LD GV+  Y  G         G   +     
Sbjct: 766 GCSAILGSSEHMPMDRGTATLGARFFERKLDVGVRARYSGGYYVKGG--VGVTTSQTGVY 823

Query: 729 PSD---YTI-DLYSQYELNANTQLFFAINNVTDRYQVRPGSVVSMPDPGRTITLGFEISY 784
           P+D   YT+ DLYS Y       L  A+ NVTDR  + P   V     GR  TL   + Y
Sbjct: 824 PADWKPYTVYDLYSSYRATDQLTLRLAMENVTDRAYLVPLGDVLAFTLGRGRTLQGTVEY 883