Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 854 a.a., TonB-dependent receptor from Pseudomonas simiae WCS417

 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 12/149 (8%)

Query: 56  ENTEQAVDETVTVHGQSILTDQRTRSDLDKVRGIANADIFSGITSVQSNNMHNEAGALDI 115
           E    +V  TVTV  +  L  Q   +  + VR   N  +  G     SN+ +N       
Sbjct: 136 EQNINSVPSTVTVQEREALDRQNVNTIRELVRYEPNVSV-GGAGGRSSNSGYN------- 187

Query: 116 GIRGVQGEGRVPIFIDGSLQSTHTSRGYQGVSDRTYIDTDLLSSLTVNKGATIESSPYAS 175
            IRG+ G+ R+   +DG     +   G    + R Y+D +++  + + +G    S+ Y S
Sbjct: 188 -IRGIDGD-RILTQVDGVEVPDNFFNGPYAKTRRNYVDPEIVKRVEILRGPA--SALYGS 243

Query: 176 GAVGGVVNATTLGIKDIIKDDQAFGVVLK 204
            A+GG V+  TL   DIIK  Q  G  LK
Sbjct: 244 SAIGGAVSYFTLDPDDIIKPGQDVGARLK 272