Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 852 a.a., TonB-dependent receptor from Pseudomonas simiae WCS417

 Score = 74.3 bits (181), Expect = 3e-17
 Identities = 147/669 (21%), Positives = 247/669 (36%), Gaps = 125/669 (18%)

Query: 42  TLLPVVLSSVVQAQENTE-----------QAVDETVTVHGQSILTDQRTRSDLDKVRGIA 90
           TL+ V  + VV+  E T              +     V+  ++     ++ D+D+ +   
Sbjct: 92  TLIKVGSTYVVRPDEGTTTQSGVIQLDALSVIGTGTEVNSSTVGRSTLSQEDIDRYQSNN 151

Query: 91  NADIFSGITSVQSNNMHNEAGALDIGIRGVQGEGRVPIFIDGSLQSTHTSRGYQGVSDRT 150
              +   +  V S     + G   I IRG      VP+ +DG+ +S    R  QG     
Sbjct: 152 IPSLLQTLPGV-SQGGSLKPGGQTINIRGFGDAEDVPLTVDGATKSGF-ERYQQGT---V 206

Query: 151 YIDTDLLSSLTVNKGATIESSPYA-SGAVGGVVNATTLGIKDIIKDDQAFGVVLKARANN 209
           +I+ +L+ S+ V KG    +SP+  +G  GG VN TT    D++KD +  G +LK   + 
Sbjct: 207 FIEPELIKSIEVEKGP---NSPFTGNGGFGGTVNMTTKDAPDLLKDGRNSGAMLKYGYS- 262

Query: 210 HNRTPDVSGDYSEQGQYALDERGEHSAFKHGSLMLGLGYQAESFNTVLAYSKRSKGNHF- 268
                  S D+ +    A+  R +   F                   LAY  +  G+   
Sbjct: 263 -------SNDHEQVYSSAVFGRTDDGRF-----------------DALAYLTQRDGDDMK 298

Query: 269 -AGKKGYEEYQEPVVGQGQEVVNTSFESDSWLFKLASDTGTAHNADFNY-RHHAQKAGEV 326
            A K   E  Q P+    Q + N++   D  LFK+ +     H    +Y R H+ +    
Sbjct: 299 VAAKLPNENNQYPI--NPQRLPNSAQNVDGKLFKVNAHFTEEHAVGLSYSRSHSNR---- 352

Query: 327 LMAYWYKSSEDWEGNPYPDGKDRMPQWGLGTAKV----------NTYSANYYYQP-DHPW 375
               W   S      P P  +  + ++G   A             T+S  Y Y P D+P 
Sbjct: 353 ----WTPFSA--ASYPTPPTQANIDRYGYEAALKRFLAHRDTVDTTWSGKYEYTPVDNPL 406

Query: 376 LNLNANFWYT---EADLAQYNGLWALGTNAEQYFHAYHNDRSGLSLTNETLLTQWPVRLN 432
           ++L   +  +   + D       + L T   +   AY +    L + N +L    P++  
Sbjct: 407 VDLTVKYSQSNTDQTDERDATAFFQLATGGRKMDTAYTD--KNLDVRNVSLFDTGPLQHA 464

Query: 433 YGLAQQNERLSPEEDGQTRFTKTVTSR------------HGKRTAQNLFAN-----ADID 475
             +  Q  +   E +     T   T R            HGK    + F        D+ 
Sbjct: 465 VTVGGQIRKHIRETEMWMPGTTYNTPRYNYGHFQPGFMPHGKVDTNSFFVQDAVTLGDVT 524

Query: 476 YSP-LRVQLGLNLHNAKSTDYQTKQQ----LDYKEKL-----DLLSEFTYALTPSTQLFL 525
            +P +R     N   A    Y +        DY ++        L+ F + + P+  LF 
Sbjct: 525 ITPSMRYDHVRNRGEANDAPYYSNPDPSIGHDYSDRTYTGWSPRLAVF-WTVNPNLGLFA 583

Query: 526 KSSRTYRMPSLYETTLSNEVFSYNPYN-PIKPEQAWNNEVGVQFMASNSVLQDDRLNLSV 584
             S+T+R P + E      + S    +  + PE+  +  VG      N +  DD L L  
Sbjct: 584 NWSKTWRAPVIDEQYEVQGLGSRTATSVDLDPERITSISVGSVSSFDNLIAHDDNLQLRT 643

Query: 585 SYFRNSIKD-------------FISGGRL--AKTPGMSEWQANFTFTNYDKLQLSGWELG 629
           ++F N ++D              I+GG +  A  PG     A   + N   L + G+EL 
Sbjct: 644 TFFHNKVEDEIFKATGVGCQNQAINGGSISTACPPG-----ALSNYRNIGGLTIKGFELE 698

Query: 630 AHYQYAWLY 638
           + Y   +L+
Sbjct: 699 SFYNSTYLF 707