Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., TonB-dependent receptor, B12 family from Pseudomonas putida KT2440

 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 46/252 (18%)

Query: 46  VVLSSVVQAQENTEQAVDETVTVHGQSILTDQRTRSDLDKVRGIANADIFSGITSVQSNN 105
           V++S+  Q +  T  +   TV            TR+D+D+++  +  D+ S +  VQ   
Sbjct: 58  VLISASRQVESRTATSAANTVF-----------TRTDIDRLQPSSVTDLLSRVPGVQVAP 106

Query: 106 MHNEAGALDIGIRGVQGEGRVPIFIDGSLQSTHTSRGYQGVSDRTYIDTDLLSSLTVNKG 165
                    I IRG +    + + +DG   +  TS    G S   ++D D +  + V +G
Sbjct: 107 TGGRGSLPGIFIRGTKAAQSL-VLVDGVRIANATS----GDSGLQFLDIDQIERIEVLRG 161

Query: 166 ATIESSPYASGAVGGVVNATTL-----GIKDIIK----DDQAFGVVL-------KARANN 209
           +   S+ Y S A+GGV+   T      G++  ++     +Q F   L         R N 
Sbjct: 162 S--RSAVYGSDAIGGVIQIFTRRSNGPGLQPRLRMAAGSNQTFQRSLGLSGGNDSTRFNL 219

Query: 210 HNRTPDVSGDYSEQGQYALDERGEHSAFKHGSLMLGLGYQAESFNTVLAYSKR-SKGNHF 268
                + +G  S    +A D  G+H A+++ +L L L +          +S+R   G + 
Sbjct: 220 GASLDETAGIDSTGPSFASD--GDHDAYRNKALNLSLSH---------TFSERFEAGLNL 268

Query: 269 AGKKGYEEYQEP 280
              +G  E+ EP
Sbjct: 269 LDSRGRREFDEP 280