Pairwise Alignments

Query, 784 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 728 a.a., TonB-dependent hemin , ferrichrome receptor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 20/188 (10%)

Query: 35  MQLKPLFTLLPVVLSSVVQAQENTEQAVDETVTVHGQSILTDQRTRSDLDKVRGIANADI 94
           +QL    TL  VV+S      E   + V  ++ V     L   R +   D VR + N  +
Sbjct: 22  VQLAQASTLREVVVSG--SRSERAIEDVPASIDVITGEDLDPARVQDIRDLVREVPNMSV 79

Query: 95  ------FSGITSVQSNNMHNEAGALDIGIRGVQGEGRVPIFIDGSLQSTHTSRGYQGVSD 148
                 F G+T   S      AG     +RG++G  RV + +DG       S G  G + 
Sbjct: 80  RRAPQRFGGVTG--STGRDGNAG---FNLRGLEGN-RVLLTVDGIRVPRELSSGVFGSAS 133

Query: 149 --RTYIDTDLLSSLTVNKGATIESSPYASGAVGGVVNATTLGIKDIIKDDQAFG--VVLK 204
             R Y D  L+S + + +GA   S+ Y S  + G+V   T   KD++K  Q FG  V LK
Sbjct: 134 FGRDYYDLGLISRVEIVRGAN--SALYGSDGLAGMVAMFTTEPKDLLKPGQTFGGRVGLK 191

Query: 205 ARANNHNR 212
           A + +H+R
Sbjct: 192 ADSEDHSR 199



 Score = 33.5 bits (75), Expect = 4e-05
 Identities = 62/243 (25%), Positives = 97/243 (39%), Gaps = 39/243 (16%)

Query: 523 LFLKSSRTYRMPSLYETT--LSNEVFSYN--PYNPIKPEQAWNNEVGVQFMASNSVLQDD 578
           LF   +  ++ PS  +      N + SY   P   +KPE +   E+GV+           
Sbjct: 482 LFANLAAGFKAPSALQLNNYFQNTLASYRTIPNPNLKPESSRTLELGVRDKVGP------ 535

Query: 579 RLNLSVSYFRNSIKDFISGGRLAKTPGMSEWQAN---FTFTNYDKLQLSGWELGAHYQYA 635
            +   V+ F    KDFI    L    G++    N   +   N  +++LSG+EL    ++A
Sbjct: 536 -VQWEVAAFTGRYKDFIE--ELVVVGGVAGNPLNPLTYQAVNRGQVRLSGFELKG--KFA 590

Query: 636 WLYTHFAATLYSETKICSVQQAQYAESDTCNSLGFAWGLTPTRIPPKQNLYLNVGTKFFN 695
                     Y +TK            DT   LG      P        L L V  +  +
Sbjct: 591 LGPATDLRLAYGQTK----------GKDT--RLG-----APLNTVNPARLMLGVDQRVGD 633

Query: 696 DTLDSGVKVSYHSGKSNPSDWLAGTAANPILEIPSDYTIDLYSQYELNANTQLFFAINNV 755
             L + V    H+ K + SD      AN     PS  T+DL + ++++  T+L  AI+N+
Sbjct: 634 WKLGAVVA---HTMKKSTSDINYANLANQFAP-PSYTTLDLRASWQVSKATKLSAAIHNL 689

Query: 756 TDR 758
           TDR
Sbjct: 690 TDR 692