Pairwise Alignments

Query, 331 a.a., DNA-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., DNA-binding protein from Pseudomonas simiae WCS417

 Score =  339 bits (869), Expect = 6e-98
 Identities = 172/322 (53%), Positives = 229/322 (71%), Gaps = 1/322 (0%)

Query: 1   MSQIPEISVESTDLLTEIAVSYYQDGATQEEISKKYTISRAKVGRLLKQARDEGIVEITV 60
           MS   +      D +TE+A+ YY +  TQE I+K++ +SRAKV RLLK+ARDEGIVE+ V
Sbjct: 1   MSDSTQRIASDIDQMTEVAMLYYLENVTQEAIAKRFDLSRAKVSRLLKRARDEGIVEVRV 60

Query: 61  KYHPVFSAKIEQRLIERFGVRRALIALDQPNDEAQRQQVAGLVSNYLTSTLKNGMVVTVG 120
             HP  + ++E+ L+ERF + RALIA+D    + QR  VA LV+NYL  TL +GM+V VG
Sbjct: 61  LQHPAMNNELERALVERFKLDRALIAVDHSEPDTQRSAVASLVANYLNKTLSDGMIVAVG 120

Query: 121 QGRNVSAVAHHVGVITPRDCKFVCSIGGIHPRGGMFNADHICRQLAKKYGGSSETLYAPA 180
            GRNV AVA +V +   R+C FVC+IGG    G   N DHICR+LA ++GG SE+LYAPA
Sbjct: 121 MGRNVGAVADNVFLPVTRNCTFVCAIGGSLKAGEYMNPDHICRRLALRFGGESESLYAPA 180

Query: 181 YAENPEQKRVFMQNSTVKQTLDLARKADIALVGIGDMSENSYMVDLGWFTPEEVVQSRLN 240
              NPE + V + N TV+ TLD AR+ADIAL+GIGDMSENS MV +GWF+P+E+ Q+RL+
Sbjct: 181 LVANPELRGVLINNDTVRSTLDRARRADIALIGIGDMSENSNMVRMGWFSPQEIAQARLS 240

Query: 241 QGVVGDFAGHDFFDVHGRIANTVMNDRVIGLGIDEFRPIAEVIAIAAENSKPLALLGALR 300
            G VGD  G+DF D+HG+ A   +  RVIGL + E   I +V+AIA+EN+K  A LGALR
Sbjct: 241 -GTVGDMMGYDFIDIHGQPAVNAIQGRVIGLTVPELFRIPDVVAIASENTKAAATLGALR 299

Query: 301 TGAIDVIATSVSNALTVLNLDE 322
           +G I+ +AT+V+NA T+L LD+
Sbjct: 300 SGVINTLATTVTNAHTILALDD 321