Pairwise Alignments

Query, 331 a.a., DNA-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., LsrR, transcriptional repressor of lsr operon from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  100 bits (249), Expect = 5e-26
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 17/314 (5%)

Query: 15  LTEIAVSYYQDGATQEEISKKYTISRAKVGRLLKQARDEGIVEITVKYHPVFSAKIEQRL 74
           +  IA  YY DG TQ EIS++  ++R KV RLL++    GI+ + +        + E  L
Sbjct: 18  VARIAWFYYHDGLTQSEISERLGLTRLKVSRLLEKGHQSGIIRVQINSRFEGCLEYENAL 77

Query: 75  IERFGVRRALIALDQPNDEAQRQQVAGLVSNYLTSTLKNGMVVTVGQGR-NVSAVAHHVG 133
              F ++   +    P+ +   +   G  ++ L  +L+   ++ VG G   ++ +    G
Sbjct: 78  RNHFALQNIRVLPALPDADIGLRLGIG-AAHMLMESLRPQQLLAVGFGEATMTTLKRLSG 136

Query: 134 VITPRDCKFVCSIGGIHP-RGGMFNADHICRQLAKKYGGSSETLYAPAYAENPEQKRVFM 192
            I+ +  + V   GG+ P   G+   D  C         S   + AP  A + E      
Sbjct: 137 FISAQQIRLVTLSGGVGPYMTGIGQLDAAC---------SVSIMPAPLRASSQEIACTLR 187

Query: 193 QNSTVKQTLDLARKADIALVGIG--DMSENSYMVDLGWFTPEEVVQSRLNQGVVGDFAGH 250
             ++V+  +  A+ AD A+VGIG  +  + + ++  G+ T  E +     +G VGD  G+
Sbjct: 188 NENSVRDVMLTAQAADAAIVGIGAINQKDQASILKSGYITQGEQLMIG-RKGAVGDILGY 246

Query: 251 DFFDVHGRIANTV-MNDRVIGLGIDEFRPIAEVIAIAAENSKPLALLGALRTGAIDVIAT 309
            FFD HG I   + +++ +IGL ++    I  VI +A    K  A++ A+R   I+ + T
Sbjct: 247 -FFDAHGEIIPDIKIHNELIGLKLNSLSTIPTVIGVAGGEQKAEAIIAAMRGNYINALVT 305

Query: 310 SVSNALTVLNLDEQ 323
               A  ++ + E+
Sbjct: 306 DQKTAGKIIQIIEK 319