Pairwise Alignments

Query, 331 a.a., DNA-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score = 87.8 bits (216), Expect = 3e-22
 Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 13/291 (4%)

Query: 22  YYQDGATQEEISKKYTISRAKVGRLLKQARDEGIVEITVKYHPVFSAKIEQRLIERFGVR 81
           YYQ+G +Q E++    +SR  V + L+ AR+ G+V I +  +   S     ++ ++F ++
Sbjct: 23  YYQEGKSQTEVAAIMGVSRVTVVKYLQTARENGLVHINLDVNVFGSIDAALQIRDKFNLQ 82

Query: 82  RALIALD------QPNDEAQRQQVAGLVSNYLTSTLKNGMVVTVGQGRNVSAVAHHVGVI 135
           R +I  D      + + +  R +++     YL   ++NG V+ V  GR +  ++     +
Sbjct: 83  RVIIVPDGEHAGKRDDTKLMRTRLSRAGGMYLNQVIENGDVLGVAWGRTIHQMSK---TM 139

Query: 136 TPRDCKFVCSIG--GIHPRGGMFNADHICRQLAKKYGGSSETLYAPAYAENPEQKRVFMQ 193
           TP+ CK V  I   G  P            Q+A K  G   +L+ PA   +         
Sbjct: 140 TPKSCKNVTVIQMLGSMPSQPDLTIIESSSQIAYKLSGRVASLHVPAVVSSARLAMELQA 199

Query: 194 NSTVKQTLDLARKADIALVGIGDMSENSYMVDLGWFTPEEVVQSRLNQGVVGDFAGHDFF 253
              ++   D+  +   A   +G+  + + ++ +G    +E +Q+  + G VG   G  F+
Sbjct: 200 EPIIRSNFDVLTRCTKAFFVVGNALDENPLIRVGVLNKKE-MQTYRDLGAVGVICGR-FY 257

Query: 254 DVHGRIANTVMNDRVIGLGIDEFRPIAEVIAIAAENSKPLALLGALRTGAI 304
           D  G      ++ R++G+ + + R I   I +A       A LGAL  G +
Sbjct: 258 DKEGMPVVADVDQRILGISLAQLRQIERKIFLAGGERGYDATLGALLGGYV 308