Pairwise Alignments

Query, 331 a.a., DNA-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., lsr operon transcriptional repressor (NCBI) from Escherichia coli BW25113

 Score = 94.4 bits (233), Expect = 3e-24
 Identities = 80/322 (24%), Positives = 149/322 (46%), Gaps = 17/322 (5%)

Query: 2   SQIPEISVESTDLLTEIAVSYYQDGATQEEISKKYTISRAKVGRLLKQARDEGIVEITVK 61
           S I E  +   + +  IA  YY DG TQ EIS +  ++R KV RLL++    GI+ + + 
Sbjct: 6   SAISEQGMCEEEQVARIAWFYYHDGLTQSEISDRLGLTRLKVSRLLEKGHQSGIIRVQIN 65

Query: 62  YHPVFSAKIEQRLIERFGVRRALIALDQPNDEAQRQQVAGLVSNYLTSTLKNGMVVTVGQ 121
                  + E +L  +F ++   +     + +   +   G  ++ L S L+   ++ +G 
Sbjct: 66  SRFEGCLEYETQLRRQFSLQHVRVIPGLADADVGGRLGIG-AAHMLMSLLQPQQMLAIGF 124

Query: 122 GR-NVSAVAHHVGVITPRDCKFVCSIGGIHP-RGGMFNADHICRQLAKKYGGSSETLYAP 179
           G   ++ +    G I+ +  + V   GG+     G+   +  C         S   + AP
Sbjct: 125 GEATMNTLQRLSGFISSQQIRLVTLSGGVGSYMTGIGQLNAAC---------SVNIIPAP 175

Query: 180 AYAENPEQKRVFMQNSTVKQTLDLARKADIALVGIGDMS--ENSYMVDLGWFTPEEVVQS 237
             A + +  R     + VK  L  A+ AD+A+VGIG +S  +++ ++  G+ +  E +  
Sbjct: 176 LRASSADIARTLKNENCVKDVLLAAQAADVAIVGIGAVSQQDDATIIRSGYISQGEQLMI 235

Query: 238 RLNQGVVGDFAGHDFFDVHGR-IANTVMNDRVIGLGIDEFRPIAEVIAIAAENSKPLALL 296
              +G VGD  G+ FFD  G  + N  +++ +IGL +   + I   + +A   +K  A+ 
Sbjct: 236 G-RKGAVGDILGY-FFDAKGDVVTNIKIHNELIGLPLSALKTIPVRVGVAGGENKAEAIA 293

Query: 297 GALRTGAIDVIATSVSNALTVL 318
            A++ G I+ + T    A  +L
Sbjct: 294 AAMKGGYINALVTDQDTAAAIL 315