Pairwise Alignments

Query, 331 a.a., DNA-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., Transcriptional regulator, contains sigma factor-related N-terminal domain from Enterobacter asburiae PDN3

 Score =  103 bits (256), Expect = 8e-27
 Identities = 79/322 (24%), Positives = 158/322 (49%), Gaps = 23/322 (7%)

Query: 7   ISVESTDLLTEIAVSYYQDGATQEEISKKYTISRAKVGRLLKQARDEGIVEITVKYHPVF 66
           +++   +L+  +A  YY DG TQ +I ++  + R K+ RLL++ R  G++ + +      
Sbjct: 15  LALAEEELVARVAWCYYHDGLTQNDIGERLGLPRLKISRLLEKGRQSGVIRVQINSRYEG 74

Query: 67  SAKIEQRLIERFGVR--RALIALDQPNDEAQRQQVAGLVSNYLTSTLKNGMVVTVGQGR- 123
              +E  L +RFG++  R + AL+ P       ++    +  L   L+ G ++ VG G  
Sbjct: 75  CLALETELQQRFGLKLVRVMPALNTP---PMNVRLGIGAAQSLMGVLEPGQLLAVGFGET 131

Query: 124 NVSAVAHHVGVITPRDCKFVCSIGGIHP-RGGMFNADHICRQLAKKYGGSSETLYAPAYA 182
            +S++ H  G I+ +  + V   GG+ P   G+   D  C         S   + AP   
Sbjct: 132 TMSSLQHLSGFISSQQIRLVTLSGGVGPYMTGIGQLDAAC---------SVSMIPAPLRV 182

Query: 183 ENPEQKRVFMQNSTVKQTLDLARKADIALVGIGDMSE--NSYMVDLGWFTP-EEVVQSRL 239
            + E   +  + ++V+  +  A  AD+A+VGIG +++  ++ ++  G+ +  E+++ +R 
Sbjct: 183 SSAEVAGILKRETSVRDVILAATAADVAVVGIGSVNQRRDATILRSGYISEGEQLMYAR- 241

Query: 240 NQGVVGDFAGHDFFDVHGR-IANTVMNDRVIGLGIDEFRPIAEVIAIAAENSKPLALLGA 298
            +G VGD  G+ F +  G  +    ++  ++G+ +DE   +  ++ +A    K  A+  A
Sbjct: 242 -KGAVGDILGY-FLNAEGECVEELEIHKELLGVTLDELAQLPTIVGVAGGEEKADAIYAA 299

Query: 299 LRTGAIDVIATSVSNALTVLNL 320
           L+   I+ + T  + A  VL L
Sbjct: 300 LKGRRINGLVTEETTARAVLAL 321