Pairwise Alignments

Query, 331 a.a., DNA-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., Cro/Cl family transcriptional regulator from Escherichia coli ECRC100

 Score =  113 bits (282), Expect = 7e-30
 Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 9/310 (2%)

Query: 14  LLTEIAVSYYQDGATQEEISKKYTISRAKVGRLLKQARDEGIVEITVKYHPVFSAKIEQR 73
           L+ +IA  YY+   TQ +I+++  I R  + RLLK+ RD+GIV I + Y    +  +EQ+
Sbjct: 9   LIVKIAQLYYEQDMTQAQIARELGIYRTNISRLLKRGRDQGIVTIAINYDYNENLWLEQQ 68

Query: 74  LIERFGVRRALIALDQPNDEAQRQQVAGL-VSNYLTSTLKNGMVVTVGQGRNVSAVAHHV 132
           L ++FG++  ++      DE  +  + GL  +  L   L+ G +V    GR VSA+  ++
Sbjct: 69  LKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENL 128

Query: 133 GVI-TPRDCKFVCSIGGIHPRGGM---FNADHICRQLAKKYGGSSETLYAPAYAENPEQK 188
                 R    V  IGG  P G +   ++ + +    A K  G S     PA  +NP  +
Sbjct: 129 PQAGQSRQLICVPIIGG--PSGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIR 186

Query: 189 RVFMQNSTVKQTLDLARKADIALVGIGDMSENSYMVDLGWFTPEEVVQSRLNQGVVGDFA 248
              MQ+   K         D+ALVGIG  +         ++  EE       Q V GD  
Sbjct: 187 NGIMQSQHFKTISAYWDNLDVALVGIGSPAIRDGANWHAFYGGEESDDLNARQ-VAGDIC 245

Query: 249 GHDFFDVHGRIANTVMNDRVIGLGIDEFRPIAEVIAIAAENSKPLALLGALRTGAIDVIA 308
              FFD+HG +  T M+++ + + +++ +     I IA    K   ++GALR   I+ + 
Sbjct: 246 SR-FFDIHGEMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYINCLV 304

Query: 309 TSVSNALTVL 318
           T+ S A  +L
Sbjct: 305 TNSSTAELLL 314