Pairwise Alignments

Query, 331 a.a., DNA-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., transcriptional regulator from Agrobacterium fabrum C58

 Score =  133 bits (335), Expect = 5e-36
 Identities = 93/315 (29%), Positives = 164/315 (52%), Gaps = 20/315 (6%)

Query: 18  IAVSYYQDGATQEEISKKYTISRAKVGRLLKQARDEGIVEITVKYHPVFSAKIEQRLIER 77
           + V ++ +G  Q EI+++  +S  KV R++   R  G+V+IT+         +E  +  R
Sbjct: 4   VLVLHFIEGVKQSEIAERMNLSHTKVNRMIAAGRKAGMVKITIASPYQRLVDLENEISRR 63

Query: 78  FGVRRALIALD-QPNDEAQRQQVAGLVSNYLTSTLKNGMVVTVGQGRNVSAVAHHVGVIT 136
           FG+ ++++      N E   Q V  + +N+L  T+++G V+ +  G+ VSAV  ++    
Sbjct: 64  FGLTQSVVTPTVSDNPETVLQMVGRVAANHLLETIRDGDVIAITGGKAVSAVVDNLEAER 123

Query: 137 PRDCKFVCSIGGIHPRGGMFNADHICRQLAKKYGGSSETLYAPAYAENPEQKRVFMQNST 196
             D + V   GG+  +    + +H+  QLA+K GGS+  L+AP +AE+ EQ+ + M  ++
Sbjct: 124 RFDVRVVPLTGGVQGKH-YTDVNHLATQLAEKLGGSASLLHAPLFAEDEEQRDLLMNVAS 182

Query: 197 VKQTLDLARKADIALVGIGDM-SENSYMVDLGWFTPEEV--VQSRLNQGVVGDFAGHDFF 253
           +++  DLAR+A +ALVGIG + +  S   DL    P+     Q+ ++ G+ G+F  H   
Sbjct: 183 IREVFDLARQAQVALVGIGSVEAPGSGYYDL---LPDAARGGQALMDVGIAGEFLAH-LT 238

Query: 254 DVHGRIANTVMNDRVIGLGIDEFRPIAEVIAIAAENSKPLALLGALRTGAIDVIATSVSN 313
              G++A   +N RV+ L   +      +I +AA         GA++ G   V AT    
Sbjct: 239 MADGQLARIDLNSRVVALDPRQLARCPNIIGVAA---------GAIKAG--PVAATLAGR 287

Query: 314 ALTVLNLDEQMQTAL 328
            LT L +DE + + L
Sbjct: 288 YLTSLVVDEAIASYL 302