Pairwise Alignments

Query, 301 a.a., multidrug transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., Integral membrane protein from Variovorax sp. SCN45

 Score = 89.4 bits (220), Expect = 9e-23
 Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 28/299 (9%)

Query: 8   LVLFSALLHAGWNIIGKRYQSSGPSFFLGATSATSLLLTPYIVWYFTKIGWSTLP---TQ 64
           L+L + ++HAGWNI+ K+  ++G + F   TS  ++L+   +      +GW+ +P     
Sbjct: 8   LILLAGIIHAGWNIVAKK--ANGDARFSFQTSVFNMLIWAPVG---ITLGWNVVPGWGAA 62

Query: 65  FWLLLVVSGLSQMVYMLGLAFAYSKVDIGIAYPLARGL-PVLLVGAGTVMLGYDLQLNQW 123
            W  +V+SG+  + Y + L   Y + D+ + YPLARG  P+L      + LG  + L   
Sbjct: 63  EWGFVVLSGVLHVFYFIVLLRGYRRSDLTVVYPLARGSGPLLSSLVAVLFLGEKISLFGV 122

Query: 124 LGFALITLGCLMIP-----LQKFRQFRFADYANLGIVWALVAALGTAGYSIIDKEALAII 178
            G A + LG  ++       +K       +  + GI + ++     A Y+++D  A+  +
Sbjct: 123 AGIAGVVLGVFLVAGGPKLWRKSHDAAQRERVHKGIRYGVLTGGFIAAYTVVDSYAVKFL 182

Query: 179 EQTVGSQMPASYSAVLYLGIQFWAMCIPLAIWYLLTGQRAPFVEAWRIRYT-ATLAGLMM 237
              V S +   Y   L   +    + +P+A+       RA     WR ++  A L   + 
Sbjct: 183 ---VMSPILLDYFGNLVRIV----LLLPVAL-----KDRATTARMWRSQWKYAALVAAVS 230

Query: 238 GGTYSLVLYAMTLTENVSFIVALRQTSIVFGLFMGIAFLGERWYVTRLLGVSAIVAGLV 296
             +Y LVLYA+     +S +   R+ S++F   +G   L E   + RLLG   I AG+V
Sbjct: 231 PVSYVLVLYAVQQAP-ISHVAPAREVSMLFAALIGGHLLREGDRLLRLLGAVFIAAGVV 288