Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score =  103 bits (258), Expect = 1e-26
 Identities = 123/500 (24%), Positives = 208/500 (41%), Gaps = 62/500 (12%)

Query: 84  AAANTAELYDPLMFSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQD 143
           A A +A ++D L+    DE     P +A+    S D T +   L  +  +HDG P T+ D
Sbjct: 63  AVAVSANIFDGLV--EYDEGFKLKPSLATSWETSADGTVITFRLRNDVTWHDGTPFTSAD 120

Query: 144 VEFSFEKFMAEGVPQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSL-AQSTRVLPKH 202
           V +S  +   +  P+    + ++ +V      T  +   +P+     +     T++LPKH
Sbjct: 121 VAYSLLEVTKKVHPRGNAVFANLTAVDTPDPYTAVLRFSRPSPVVWAAFNGTETQILPKH 180

Query: 203 YWQYKN-LAEPLNEPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQY 261
            ++  N L  PLN  P+G+GA+   ++  G+ +  + NP+YW K      GR    ++ +
Sbjct: 181 LYEGTNPLTNPLNGKPIGTGAFVFKEWVKGERIVLERNPNYWDK------GRPYLDRVVF 234

Query: 262 DYYRDDTVMLEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFI 321
              RD      A + GE      N       +    + D   +  E    + PA    F 
Sbjct: 235 RIIRDPASRAAALETGEAQYIPLNPVPLSDVARIKASKD---LVVETRGFEGPAPMYFFD 291

Query: 322 FNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAV 381
           FN +R  F D+RVR+A  +AL+ + + + +FY                  GL   A    
Sbjct: 292 FNLRREPFGDIRVRQAFAHALNRKALAETVFY------------------GLAKPA-AGP 332

Query: 382 LTPYKEQLPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPL 441
           +  Y+ Q     F  T  P       +    + +A ALL  AG       +     G  L
Sbjct: 333 VPSYQTQ-----FFATDLP-------QYDYNIAKAEALLDAAG-------LKKGADGVRL 373

Query: 442 SFELL--IYSPTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRL-RDRDFDMISHGFSA 498
             + +   Y     R     ++ L+ +G+++ +R  D   Y K +  + DFD  S  +SA
Sbjct: 374 RIDHIPSAYGEDYRRAGEYFKQALKRIGVDVTLRNYDLPTYIKVVFTEYDFDTHSAWYSA 433

Query: 499 NPYPSPNLLI---VWNSNYMDS--SYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSAL 553
             YP P + +    W+        S N++G   P IDA+ E+I +++ + EK  A    L
Sbjct: 434 --YPDPQIGVQRRYWSQAIKKGTPSSNASGIADPEIDAVIERI-QTEGNVEKRNADIREL 490

Query: 554 DRVLQWNFYIIPQWHLSMYR 573
            R+ Q     +    L+ YR
Sbjct: 491 QRLAQVKLPSVNLLELTFYR 510