Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score =  103 bits (256), Expect = 2e-26
 Identities = 114/485 (23%), Positives = 208/485 (42%), Gaps = 76/485 (15%)

Query: 108 PLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVK 167
           P +A     + D   +   L     +HDG P TA DV++S  + + +  P+    Y  ++
Sbjct: 77  PQLAESYEQAPDGRSITFRLRKGVTWHDGVPFTAADVKYSILEVVKKTHPRGIGTYSQLQ 136

Query: 168 SVKAIAERTVRIEMKQPNREQLFSLAQS-TRVLPKHYWQYKN-LAEPLNEPPVGSGAYQI 225
            ++   + TV + + +P+     +L  S T++LPKH ++  + L  P N  P+G+G +  
Sbjct: 137 DIETPDDHTVILRLAKPSPVIWSALNSSETQILPKHLYEGTDPLTNPWNTKPIGTGPFIF 196

Query: 226 VDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREEN 285
            ++  G  VT + NP+YW      + G+    ++ + +  D      A + GE       
Sbjct: 197 KEWVRGSHVTLERNPNYW------DAGKPYLDRLTFRFVPDAGARAAALETGE------- 243

Query: 286 QAKFWATSYTGRNFDQGLIKKEEI-----AHQAPASTQGFIFNTQRPVFQDVRVREALNY 340
            A++   S    +  + L K+ ++       +A A      FN +RP FQDVRVR A+  
Sbjct: 244 -AQYVPLSPVPLSDVERLAKRPDLVVETRGWEAVAPVFFLDFNMRRPQFQDVRVRRAIAL 302

Query: 341 ALDFEWMNKNLFYDQYQRTRS---YFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTET 397
           A+D + + + ++Y   +        FQ T + A GLP                       
Sbjct: 303 AIDKKALARTVWYGFAEPATGPVPAFQ-TAFAATGLPQ--------------------YD 341

Query: 398 YQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFE--LLIYSPTTERI 455
           Y P             ++A ALL EAG       +     G  L F    + Y    +R 
Sbjct: 342 YDP-------------KKAEALLDEAG-------LKRGPDGVRLRFNHVSIPYGDDFKRS 381

Query: 456 AIPLQKNLQLMGIEMKIRTVDTTQYTKRL-RDRDFDMISHGFSANPYPSPNLLI---VWN 511
              +++ L+ +GIE+++   D   + +++  + DFD ++  ++A  +  P + +    W+
Sbjct: 382 GEFIRQQLKKVGIEVELLNYDLPTFLRKIYTEYDFDTLNAYYAA--FADPQIGVQRRFWS 439

Query: 512 SNYMDSS--YNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHL 569
                 S   N++G ++P +DAL E  A  + D +K +AL      ++Q     I    L
Sbjct: 440 QTIRPGSAWSNASGYSNPKVDALLE-AAAVEPDPQKRKALLGEFQLIVQTELPSISLLEL 498

Query: 570 SMYRV 574
             +RV
Sbjct: 499 KQFRV 503