Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  466 bits (1199), Expect = e-135
 Identities = 253/611 (41%), Positives = 360/611 (58%), Gaps = 20/611 (3%)

Query: 11  KPIALGVTLALSSQFSWAAVIETTRLVGFGEAKYPENFTHFDYVNPQAPKYGKVTFGELG 70
           +P+ L ++LALS   + AA+ E+     FG  KYP  FTHFD+VNP APK G +     G
Sbjct: 3   RPLLLLISLALSFGAN-AAITESHGYTQFGVLKYPAKFTHFDWVNPAAPKGGTLRVMAFG 61

Query: 71  TYDNFNRFASRGVAAANTA--------ELYDPLM-----FSPA-DEIDSYYPLIASKIRY 116
           T+D  N +  +G +  +T         EL +PLM     ++P+ DE  S Y LIA  + Y
Sbjct: 62  TFDTLNPYTFKGSSPVSTPNFLQYGVNELNEPLMVGTGLYAPSGDEPTSSYGLIAQSVEY 121

Query: 117 SDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAERT 176
           S+D +W+  +L P ARFHDGKPITA DV FS+   + EG PQYR   Q+V  V  +    
Sbjct: 122 SEDRSWVVFNLRPEARFHDGKPITAYDVAFSYRTLLTEGHPQYRTNLQEVARVDILNRHR 181

Query: 177 VRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGAYQIVDFKPGQSVTY 236
           +R   K+     L        VLP+HYW+ ++      EPP+GSG Y+I    PG+ + +
Sbjct: 182 IRFVFKRAGNPLLILRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRISKVTPGRQLVF 241

Query: 237 KLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYTG 296
           +   +YW KDLPVN G  N+ +++ ++YRD  V  EAFKAGEFD+  E+QAK WA  Y  
Sbjct: 242 ERVKNYWGKDLPVNRGFYNYDKVEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYNF 301

Query: 297 RNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQY 356
              ++G + K +IAHQ P  +QG   N++RP+F   +VREAL    DFEW N+ LF   Y
Sbjct: 302 PAVNRGDVIKAQIAHQIPTQSQGLFMNSRRPIFSQAKVREALGLMFDFEWTNRTLFSSAY 361

Query: 357 QRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMREA 416
           +RT SY+ N+E+ A G+P   E  +L+PY++QLPA +FT+ +    TDG G  R  MR A
Sbjct: 362 KRTLSYYPNSEFSATGVPTGHEWLMLSPYRDQLPASLFTQPFSLPQTDGRGIPRETMRRA 421

Query: 417 FALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTVD 476
            ALL +AGW+L  + + N K G+PL FE+L+ +P  ERI  P  +NL  +GI+ ++RTVD
Sbjct: 422 LALLGDAGWKLSGQRLLN-KDGQPLRFEILLVNPNLERILQPYVENLISIGIDARLRTVD 480

Query: 477 TTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNY--MDSSYNSAGANHPVIDALTE 534
             QY +RL   DFDMI    +    P       ++S+   +  S N AG  +P++D L E
Sbjct: 481 RAQYKQRLDQFDFDMILITLNQTLSPGLEQWQYFHSSQAAIKGSKNYAGIANPIVDHLLE 540

Query: 535 QIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGLD 594
           Q+  ++   E+L A G ALDRVL W  Y IP W+L+ +R+A  ++F+  +  P YSLGL 
Sbjct: 541 QLLAAKTREEQL-AAGRALDRVLLWQHYSIPNWYLNYHRLAYRNRFAFVTT-PPYSLGLS 598

Query: 595 TWWIDQEKAAR 605
            WW+   + A+
Sbjct: 599 AWWLKASEKAQ 609