Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., hypothetical protein from Pseudomonas simiae WCS417

 Score =  489 bits (1258), Expect = e-142
 Identities = 250/557 (44%), Positives = 336/557 (60%), Gaps = 4/557 (0%)

Query: 43  KYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAELYDPLMFSPADE 102
           KYP +F HFDYVNP APK G      +G +D+ N + S+GV A N   +YD L     DE
Sbjct: 34  KYPADFKHFDYVNPDAPKGGTFRESAMGGFDSLNPYISKGVPADNLGLIYDTLAMQSLDE 93

Query: 103 IDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVY 162
             + Y L+A KI  + D +W+   L P ARFHDG PI A+DV F+F++ + EG P YR Y
Sbjct: 94  PITEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGHPIRAEDVVFTFQELIKEGSPIYRTY 153

Query: 163 YQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGA 222
           Y DV  V A     V  + K+ N  +L  +     VLPKH+W  ++ A+   E P+GSG 
Sbjct: 154 YADVDEVVAEDPLKVLFKFKRTNNRELPLILGQLPVLPKHWWATRDFAKGNLEVPLGSGP 213

Query: 223 YQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLR 282
           Y++ + K G+ + Y+   DYWAKDLP+  G  NF     DYYRD TV LEA KAG+FD  
Sbjct: 214 YKVAEVKAGRMIRYERVKDYWAKDLPITQGFYNFDNRITDYYRDSTVSLEALKAGQFDYW 273

Query: 283 EENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYAL 342
            E  AK WA +Y      QG + KEEI +  P   QGF+FN ++P+FQDVRVR+A++  L
Sbjct: 274 LEFSAKNWANAYNIPAVAQGRLIKEEIPNGNPTGMQGFVFNMRKPMFQDVRVRKAISLLL 333

Query: 343 DFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSV 402
           DFEW NK LF   Y RTRSYF+N+E  A GLP   ELA+L P + ++P  VFT+ ++PS 
Sbjct: 334 DFEWSNKQLFNGAYTRTRSYFENSEMAATGLPGPDELAILEPLRGKIPPEVFTQAFEPSK 393

Query: 403 TDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKN 462
           TDGSG IRTQ REA+ LL+EAGW + +  M +  +G+P++ E L+     ERI +P ++N
Sbjct: 394 TDGSGMIRTQQREAYQLLQEAGWRIVDDKMVDT-SGKPVTIEFLLAQTEFERILLPFKRN 452

Query: 463 LQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNYMD--SSYN 520
           L  +GI++ IR VD +Q+  R+R RDFDM+   F  +  P       W S+  D   S N
Sbjct: 453 LADLGIDLVIRRVDVSQFINRIRSRDFDMLVGSFPQSTSPGNEQREFWKSSSADKPGSRN 512

Query: 521 SAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKF 580
             G   P ID L E++  +    + L A   ALDRVLQ+ +Y+IP WH+  +RVA WD  
Sbjct: 513 YMGLKDPAIDQLVEELIDA-DSRKSLVAHAKALDRVLQFGYYVIPNWHIKTFRVAYWDHL 571

Query: 581 SRPSVLPKYSLGLDTWW 597
             P V P+Y +G  TWW
Sbjct: 572 GHPKVPPRYDVGTATWW 588