Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 537 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 70.9 bits (172), Expect = 1e-16
 Identities = 81/305 (26%), Positives = 127/305 (41%), Gaps = 39/305 (12%)

Query: 62  GKVTFGELGTYDNFNRFASRGVAAA--NTAELYDPLMFSPADEIDSYYPLIASKIRYSDD 119
           G +  G   T  + N     G+A A  +T     PL F   D+  +  P +A   + +DD
Sbjct: 43  GTLVIGSTQTPRHLNGAVQSGIATAMPSTQIFASPLRF---DDKWNPQPYLAESWKLADD 99

Query: 120 FTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAERTVRI 179
              L + L  +A FHDGKP+T+ DV FS     A     +      V+ V      T  +
Sbjct: 100 GKSLTLKLRKDALFHDGKPVTSADVAFSILAIKAN--HPFTTMMGPVEKVDTPDAYTAVV 157

Query: 180 EMKQPNREQLFSLAQS-TRVLPKHYW----QYKNLAEPLNEPPV-GSGAYQIVDFKPGQS 233
            M  P+   + +++ +   +LPKH +      KN   P N   V GSG Y++ DFKP Q 
Sbjct: 158 RMSVPHPAIVLAMSPALCPILPKHIYGDGQDLKN--HPRNTTDVIGSGPYRVTDFKPAQR 215

Query: 234 VTYKLNPDYWAKDLP------VNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDL-REENQ 286
           V  +    ++    P      +N+  ++ A +     R D + +  F     DL R  N 
Sbjct: 216 VVLERFDKFFIPGRPYLDKIIINITPDS-ASLMLGLERGD-IQMVPFATLPTDLKRLAND 273

Query: 287 AKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFEW 346
            K    S T + +D               +     FNT +    DV+VR+A+  A+D  +
Sbjct: 274 PKM---SLTPKGYD------------GIGALNWLAFNTAKKPLSDVQVRKAIATAIDKNF 318

Query: 347 MNKNL 351
           + K L
Sbjct: 319 ITKAL 323