Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 82.8 bits (203), Expect = 4e-20
 Identities = 113/480 (23%), Positives = 190/480 (39%), Gaps = 88/480 (18%)

Query: 108 PLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVK 167
           PL+A+  + S D       L P  +FHDG   TA+DV +S      +G P+ R+   +V+
Sbjct: 104 PLLATAWQVSPDGLKYSFKLRPGVKFHDGHDFTAEDVRYSVLTQKKQG-PRGRITLANVE 162

Query: 168 SVKAIAERTVRIEMKQPNREQLFSLAQS-TRVLPKHYWQYKNLAEPLNEP----PVGSGA 222
            V      T  I + +P    L SL+ +   ++P H  +Y +  EPL  P    PVG+G 
Sbjct: 163 RVDTPDPLTAVIVLSRPAPFLLKSLSSAELPIVPAH--RYSD-GEPLGNPNITAPVGTGP 219

Query: 223 YQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLR 282
           +    +  G  +  + NP+YW K  P      +  ++   + RD   +  A + GE D+ 
Sbjct: 220 FVFEQWVRGSHLVLRKNPNYWRKGYP------HLDRVIVKFVRDPAAISTAVETGEVDVA 273

Query: 283 EENQAKFWATSYTGRNFDQGLIKKEEIAH----QAPASTQGFI-------FNTQRPVFQD 331
           +                  GL   E +A     +   +  GF+       FN   PV  +
Sbjct: 274 Q----------------GVGLADLERLAGNPKLKVDDTYDGFLNNASFLEFNVDNPVLAN 317

Query: 332 VRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPA 391
            +VR A+  A+D  ++   ++Y + +   S                           +P 
Sbjct: 318 PKVRHAIAQAIDRNFIRNTIYYKRVEVVNS--------------------------PIP- 350

Query: 392 RVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPT 451
           RV ++ Y     D + R    +  A  LL EAG             G+  S   L Y P 
Sbjct: 351 RVLSDYYD----DSTFRYPFDVAAANRLLDEAG-------QPKQANGQRFSLR-LSYIPG 398

Query: 452 TE--RIAIPLQKNLQLMGIEMKIRTVDTTQYTKRL-RDRDFDMISHGFSANPYPSPNL-L 507
            E  R    L+  L  +GI++++   D   + K +   RDFD+  +G      P+  +  
Sbjct: 399 AEFKRTTDYLRSALARVGIKVEVVDGDLPTFLKHVYSTRDFDININGLGRLFDPTVGVQR 458

Query: 508 IVWNSNYMDSS--YNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIP 565
           I W     +     N+A  ++P +D L  Q A  + DT K  A    + +++     ++P
Sbjct: 459 IYWGDGVRNPLIWINAAHYDNPQVDELFRQ-AAVELDTGKRAAQFKQIQQIVGRELPVLP 517