Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 97.1 bits (240), Expect = 2e-24
 Identities = 106/436 (24%), Positives = 180/436 (41%), Gaps = 51/436 (11%)

Query: 108 PLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVK 167
           P +A+    S D       L    R+HDGKP T+ DV  S    + +  P+ R  +  V 
Sbjct: 90  PQLATAWTVSADGLQYTFTLRRGVRWHDGKPFTSADVAHSIG-LLKQYHPRGRATFSSVA 148

Query: 168 SVKAIAERTVRIEMKQPNREQLFSLAQS-TRVLPKHYWQY-KNLAEPLNEPPVGSGAYQI 225
            V+     T  + + +P    L +L+ S + ++P+H ++  K  A P N  P+G+G +  
Sbjct: 149 EVRTPDAYTAVLVLSKPVPYLLTALSASESPIVPRHLYESGKADANPANNAPIGTGPFVF 208

Query: 226 VDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREEN 285
            ++  G  VTY+ NPDYW    P         ++   +  D      A + GE  L    
Sbjct: 209 KEWVRGSHVTYERNPDYWDNPKPY------VDRLIVRFIPDAAARAAAIEKGEVHLSPGT 262

Query: 286 QAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFE 345
                      R   +  +  E   +Q   +     FN + P  QD+RVR+A+ +A++ +
Sbjct: 263 PVPLGDVE---RLRAKPNLVFEPNGYQYINNVSRVEFNLENPALQDLRVRQAIAHAINRQ 319

Query: 346 WMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDG 405
            + K ++Y Q               Q +P     A+   Y   LP          ++ D 
Sbjct: 320 VVQKTVWYGQ--------------GQLIPGPVHPALRKFYVPDLPVLPHDVKRAEALLDA 365

Query: 406 SGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKNLQL 465
           +G +R           +AG  L+ K+        P+S E        +R A  L+++L  
Sbjct: 366 AGFVR----------GKAGGNLRLKLAV-----VPISNE------GGQRTAEYLKQSLGR 404

Query: 466 MGIEMKIRTVDTTQYTKRL-RDRDFDMISHGFSANPYPSPNL-LIVWNSNYMDS--SYNS 521
           +GIE+ I + D   Y +R+  DR FD+     S    P+  +  + W+ N+       N 
Sbjct: 405 IGIEVTIHSQDFATYVRRVYADRAFDLHVSVMSNTFDPTVGIQRLYWSKNFKKGLPFSNG 464

Query: 522 AGANHPVIDALTEQIA 537
           +G ++P +D L E  A
Sbjct: 465 SGYSNPEVDRLLEAAA 480