Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 90.9 bits (224), Expect = 1e-22
 Identities = 108/455 (23%), Positives = 188/455 (41%), Gaps = 52/455 (11%)

Query: 108 PLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVK 167
           P +A+K   S D       L    ++HDGK  T+ DV +S E  + +  P+ R  + ++ 
Sbjct: 79  PQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIE-LLKKIHPRGRNTFANLT 137

Query: 168 SVKAIAERTVRIEMKQPNREQLFSL-AQSTRVLPKHYWQYKNLAE-PLNEPPVGSGAYQI 225
           ++    + T  + + +P    + +L A  T ++PKH ++  + A  P N  P+G+G ++ 
Sbjct: 138 AIDTPDKYTAILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNNNAPIGTGPFKF 197

Query: 226 VDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREEN 285
            ++  G  + Y+ N DYW K  P         Q+   +  D      AF+ G  DL    
Sbjct: 198 KEWVRGSHIVYERNNDYWDKPKPF------VDQLIVRFVTDPAAAAVAFETGTVDLGYRT 251

Query: 286 QAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFE 345
                  +   R      ++ E   +   ++     FN     F++ +VR+A+ +A+D  
Sbjct: 252 PVPL---ADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAIDRN 308

Query: 346 WMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDG 405
            + K + Y   Q + S        A GL  A      +PY                    
Sbjct: 309 VIVKVVNYGYGQVSYSPI------APGL-KAFHDPAPSPY-------------------- 341

Query: 406 SGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKNLQL 465
                  +++A ALL EAG+    K    V+   PL F  +       R+A  L+  L  
Sbjct: 342 ----AFDVKKANALLDEAGFP---KKAGGVRFSVPLDFNPI--GADGPRLADYLRSALAR 392

Query: 466 MGIEMKIRTVDTTQYTKRL-RDRDFDMISHGFSANPYPSPNL-LIVWNSNYMDSSYNSAG 523
           +GI + +R  D + + KR+  DRDF    +G S    P+  +  + W+ N++     S G
Sbjct: 393 IGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGASNLFDPTVGVQRLYWSKNFIKGVPFSNG 452

Query: 524 ANH--PVIDALTEQIAKSQQDTEKLRALGSALDRV 556
            ++  PV+D L E  A      ++L+      D V
Sbjct: 453 THYQNPVVDKLLEDAAVENDPGKRLKLFKDFQDTV 487