Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  485 bits (1248), Expect = e-141
 Identities = 253/568 (44%), Positives = 338/568 (59%), Gaps = 4/568 (0%)

Query: 43  KYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAELYDPLMFSPADE 102
           KYP +F HFDYVNP APK G       G +D+ N F ++GVAA N   +YD LM    DE
Sbjct: 39  KYPADFKHFDYVNPDAPKGGTFRQSSFGGFDSLNPFINKGVAAENIGIIYDTLMRQSQDE 98

Query: 103 IDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVY 162
             + Y L+A KI  + D +W+   L P ARFHDG P+ A DV F+F   + +G P YR Y
Sbjct: 99  PFTEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQY 158

Query: 163 YQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGA 222
           Y DV  V A     V  + K  N  +L  +     VLPKH+++ +       E P+GSG 
Sbjct: 159 YADVAEVVAEEPLKVLFKFKHKNNRELPLILGQLPVLPKHWYENREFNRGNLEIPLGSGP 218

Query: 223 YQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLR 282
           Y++   K G+SV Y+   DYWAKDLP+N G  NF  + +D YRD TV LEA KAG FD  
Sbjct: 219 YKVAKVKAGRSVRYERVKDYWAKDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYG 278

Query: 283 EENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYAL 342
            E  AK WAT+Y      +G + KEE+ +  P   QGFIFN +RPVFQDVRVR+AL+  L
Sbjct: 279 LEVSAKNWATAYNVPAVREGRLIKEELPNGNPTGMQGFIFNIRRPVFQDVRVRQALSLLL 338

Query: 343 DFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSV 402
           D+EW NK LF   Y RT SYF+N+E  A+GLP+  EL +L P + ++P +VFTE +   V
Sbjct: 339 DYEWTNKQLFNGAYTRTGSYFENSEMAARGLPSPNELKILEPLRGKVPEQVFTEVFHNPV 398

Query: 403 TDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKN 462
           +DGSG IR Q R+A+ LL+EAGW++ +  M + + G+P S E L+     ERI +P ++N
Sbjct: 399 SDGSGMIREQQRQAYKLLQEAGWKIVDDKMVDAQ-GKPASIEFLLAQTEFERILLPFKRN 457

Query: 463 LQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNYMDS--SYN 520
           L  +GIE+ IR VD +QY  RLR RD+DMI  G+  +  P       W+S   D+  S N
Sbjct: 458 LADLGIELNIRRVDVSQYITRLRSRDYDMIVGGYPQSNSPGNEQREFWSSAAADNPGSRN 517

Query: 521 SAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKF 580
             G   P ID L +Q+  +    + L     ALDRVL W +Y+IP WH+  +RVA W+  
Sbjct: 518 FIGLRDPAIDQLVDQLINA-DSRQSLIDHCRALDRVLLWGYYVIPNWHIKTWRVAYWNHI 576

Query: 581 SRPSVLPKYSLGLDTWWIDQEKAARLPE 608
             P+V PKY +G+DTWWI  +    + E
Sbjct: 577 GHPNVSPKYDIGIDTWWIKPDVTPAVSE 604