Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

 Score =  458 bits (1178), Expect = e-133
 Identities = 248/612 (40%), Positives = 362/612 (59%), Gaps = 22/612 (3%)

Query: 11  KPIALGVTLALSSQFSWAAVI-ETTRLVGFGEAKYPENFTHFDYVNPQAPKYGKVTFGEL 69
           +P+ L ++LALS  F  AA++ E+     FG  KYP  FTHFD+VNPQAPK G +     
Sbjct: 3   RPLLLSLSLALS--FPAAAIVSESHGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMAF 60

Query: 70  GTYDNFNRFASRGVAAANT--------AELYDPLM-----FSPA-DEIDSYYPLIASKIR 115
           GT+D  N +  +G +   T        +EL +PLM     + P+ DE  S Y LIA  + 
Sbjct: 61  GTFDTLNPYTFKGSSPITTPNFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARSVE 120

Query: 116 YSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAER 175
           YS+D +W+  +L P AR+HDG+PIT+ DV FS+   + +G P YR   Q+V+ V  +   
Sbjct: 121 YSEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPL 180

Query: 176 TVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGAYQIVDFKPGQSVT 235
            +R   K+     L        VLPKHYWQ ++      EPP+GSG Y+I   +PG+ + 
Sbjct: 181 RIRFVFKRAGNPLLILRLGEMPVLPKHYWQKRDFKATTFEPPLGSGPYRITQVQPGRRLV 240

Query: 236 YKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYT 295
           ++   +YW KDL VN G+ NF +++Y++YRD TV  EAFKAGEFD+  E+QAK WA  Y 
Sbjct: 241 FERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYN 300

Query: 296 GRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQ 355
                +G + K +I H  P  TQG   N++R  F D RVR+AL   LDFEW N+ LF   
Sbjct: 301 FPAVRRGEVIKAQIPHSIPTQTQGLFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSA 360

Query: 356 YQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMRE 415
           Y+R+ SY+ N+E+ A GLP   E  +L P+++QLPA++F+E Y+ S TDG G  R  +R+
Sbjct: 361 YRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGISRQTLRQ 420

Query: 416 AFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTV 475
           A  LL EAGW+L  + + + K G+ L  ELL+ +P  ERI  P  +NL  +GI+ ++RTV
Sbjct: 421 ALGLLAEAGWKLHGQRLVDSK-GQQLRMELLLVNPNLERILQPYVENLSSIGIDARLRTV 479

Query: 476 DTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNY--MDSSYNSAGANHPVIDALT 533
           D  QY +RL   DFDMI    +    P     + ++S+      S N AG   PV+D L 
Sbjct: 480 DRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKDPVVDHLL 539

Query: 534 EQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGL 593
           + +  ++   +++ A   ALDRVL W++Y+IP W+L  +R+A  ++F+  +  P Y+LGL
Sbjct: 540 DTLLAARTRDDQV-AAARALDRVLSWHYYMIPNWYLDNHRLAYRNRFAFVTT-PPYTLGL 597

Query: 594 DTWWIDQEKAAR 605
           ++WWI   + A+
Sbjct: 598 NSWWIKTSEKAQ 609