Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., putative ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

 Score =  372 bits (955), Expect = e-107
 Identities = 208/572 (36%), Positives = 307/572 (53%), Gaps = 9/572 (1%)

Query: 33  TTRLVGFGEA-KYPENFTHFDYVNPQAPKYGKVTFG--ELGTYDNFNRFASRGVAAANT- 88
           T  L  +GEA +Y  +F HFDYVNP APK G +     E+G +D+   +  +G+  +   
Sbjct: 53  THALTVYGEAPRYAASFRHFDYVNPSAPKGGILRRSAIEIGQFDHILPYIDKGIGVSEVD 112

Query: 89  AELYDPLMFSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSF 148
             LY PL     DE  + Y LIA ++    +  WL  D++P A F DG+P+ A+DV F+F
Sbjct: 113 GLLYAPLAVRSYDEPYTVYGLIARRMERGPNDEWLRFDIDPRATFADGRPVRAEDVRFTF 172

Query: 149 EKFMAEGVPQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKN 208
           +  M++G  +YR  + DV  V      +VR ++K  +   L     S  V+P+H  Q ++
Sbjct: 173 DLLMSKGSLKYRTQFADVARVTVERLHSVRFDLKPEHGRTLALDLASLPVMPEHDLQQRD 232

Query: 209 LAEPLN-EPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDD 267
            A     + PVGSG Y+I     G+S+T++ +P +WA+DLP + GR NF +++ +Y+ D 
Sbjct: 233 FANGAGFDKPVGSGPYRIGRIDNGRSITFERDPAWWARDLPASRGRYNFDKLRIEYFGDT 292

Query: 268 TVMLEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRP 327
            V  +  K G +D   E  A  +   Y G   D G +++  +    P   QGF+FN  +P
Sbjct: 293 EVARQVLKGGGYDYNREFSATAYTLGYNGAQLDDGRLQRAHLGPAKPQVAQGFVFNLDQP 352

Query: 328 VFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKE 387
            F+D RVR+AL    DFEW N+ +  + Y R +S F NT   A+ LP+A EL +L P + 
Sbjct: 353 QFKDRRVRQALGMLWDFEWSNRQMMRNLYIRQQSVFSNTPLAARQLPDAGELKLLAPLRG 412

Query: 388 QLPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLI 447
           Q+P  VFT  +   VTDGSG IR Q  +A ALL++AGW  +   + N   G PL+F  L 
Sbjct: 413 QVPDEVFTTVFTAPVTDGSGIIRQQQLQALALLEQAGWHPEGDRLVN-SQGTPLAFTFLN 471

Query: 448 YSPTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLL 507
                ER+ +P ++NL  +G+ + IR VD+ QY  RL  RD+DMI  G+     P   L 
Sbjct: 472 GQAGLERLLLPWKRNLAQIGVTLNIRNVDSAQYVNRLMARDYDMIVTGYPVTLSPGAELY 531

Query: 508 IVWNS--NYMDSSYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIP 565
             + S   +   S N      P +D L + + ++    + LR    ALDRVLQWN+Y IP
Sbjct: 532 NYFGSAAAHDPGSNNLMVLQDPAVDHLIDGLVRADTQADMLRH-AHALDRVLQWNYYWIP 590

Query: 566 QWHLSMYRVAMWDKFSRPSVLPKYSLGLDTWW 597
            ++        W++F  P V   Y  GLDTWW
Sbjct: 591 NYYPPGSSTVWWNRFGLPKVQATYDEGLDTWW 622