Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ABC transporter, periplasmic substrate-binding protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  613 bits (1582), Expect = e-180
 Identities = 300/572 (52%), Positives = 389/572 (68%), Gaps = 2/572 (0%)

Query: 40  GEAKYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAELYDPLMFSP 99
           GE KY  NF HFDYVNP APK G++T   +GT+DNFNR++ RG     T  LYD L  + 
Sbjct: 32  GEPKYAFNFEHFDYVNPAAPKGGQMTLSAIGTFDNFNRYSLRGNPGVRTEALYDTLFTTS 91

Query: 100 ADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQY 159
            DE  SYYPLIA   RY+ D++W+EI +NP ARFHDG PITA+DV F+F KFM EGVPQ+
Sbjct: 92  DDEPGSYYPLIADHARYAADYSWVEISINPRARFHDGTPITARDVAFTFHKFMTEGVPQF 151

Query: 160 RVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVG 219
           R+ Y+   +VKAIA  TVRIE+ +P +E + SL  S  ++P+ +W+   L++PL+ PP+ 
Sbjct: 152 RLVYKGT-TVKAIAPLTVRIELAKPGKEDMLSLF-SLPIMPEKFWKNHKLSDPLSTPPLA 209

Query: 220 SGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEF 279
           SG Y+I  +K GQ + Y    +YWA +LPVN GR N   I+YDYY DD V  EAFKAG F
Sbjct: 210 SGPYRITQWKMGQYIVYSRVKNYWAANLPVNRGRFNLDTIRYDYYLDDNVAFEAFKAGAF 269

Query: 280 DLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALN 339
           DLR EN AK WAT Y G+NFD   I KEE  +++   T+   FN QRPVF+D RVREA+ 
Sbjct: 270 DLRLENDAKNWATRYIGKNFDNHYIIKEEQKNESAQDTRWLAFNIQRPVFKDRRVREAVT 329

Query: 340 YALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQ 399
            A DFEWMNK LFY+ + RT SYFQNTEY A+  P+A EL +L P K+ LP  VFT+ YQ
Sbjct: 330 LAFDFEWMNKALFYNAWSRTNSYFQNTEYAARNYPDADELVLLAPMKKDLPPEVFTQIYQ 389

Query: 400 PSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPL 459
           P V++G G  R  + +A ALL +AGW +  +   N  TG+PL+FELL+ + +  +  +P 
Sbjct: 390 PPVSNGDGYDRENLLKADALLTQAGWVINGQQRVNSVTGKPLTFELLLPASSNSQWVLPF 449

Query: 460 QKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNYMDSSY 519
           Q NLQ +GI M IR VD +Q T R+R RD+DM+   + A P+PS +L I W S Y+DSSY
Sbjct: 450 QHNLQRLGITMTIRQVDNSQLTNRMRSRDYDMMPRLWRAMPWPSSDLQISWASEYIDSSY 509

Query: 520 NSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDK 579
           N+ G   PV+D L  QI  +Q D  KL  LG ALDRVL WN+Y++P W+++  R+A WDK
Sbjct: 510 NAPGVQSPVVDKLIAQIIAAQGDKAKLVPLGRALDRVLTWNYYMLPMWYMAQDRLARWDK 569

Query: 580 FSRPSVLPKYSLGLDTWWIDQEKAARLPEKRR 611
           FS P++ P Y++GLDTWW D  KAA+LP  RR
Sbjct: 570 FSHPAIRPVYTIGLDTWWYDVNKAAKLPAARR 601