Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score =  636 bits (1640), Expect = 0.0
 Identities = 310/579 (53%), Positives = 402/579 (69%), Gaps = 2/579 (0%)

Query: 29  AVIETTRLVGFGEAKYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANT 88
           A+ E+      GE +Y  NF HFDYVNP APK G++T   LGT+DNFNR+A RG   A T
Sbjct: 21  AIKESYAFAVLGEPRYAFNFNHFDYVNPAAPKGGQITLSALGTFDNFNRYALRGNPGART 80

Query: 89  AELYDPLMFSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSF 148
            +LYD L  +  DE  SYYPLIA   RY+DD++W+E+ +NP ARFHDG PITA+DVEF+F
Sbjct: 81  EQLYDTLFTTSDDEPGSYYPLIAESARYADDYSWVEVAINPRARFHDGSPITARDVEFTF 140

Query: 149 EKFMAEGVPQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKN 208
           +KFM EGVPQ+R+ Y+   +VKAIA  TVRIE+ +P +E + SL  S  V P+ YW+   
Sbjct: 141 QKFMTEGVPQFRLVYKGT-TVKAIAPLTVRIELAKPGKEDMLSLF-SLPVFPEKYWKDHK 198

Query: 209 LAEPLNEPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDT 268
           L++PL  PP+ SG Y++  +K GQ++ Y    DYWA +LPVN GR NF  I+YDYY DD 
Sbjct: 199 LSDPLATPPLASGPYRVTSWKMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDN 258

Query: 269 VMLEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPV 328
           V  EAFKAG FDLR EN AK WAT YTG+NFD+  I K+E  +++   T+   FN QRPV
Sbjct: 259 VAFEAFKAGAFDLRMENDAKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPV 318

Query: 329 FQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQ 388
           F D RVREA+  A DFEWMNK LFY+ + RT SYFQNTEY A+  P+AAEL +L P K+ 
Sbjct: 319 FSDRRVREAITLAFDFEWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKD 378

Query: 389 LPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIY 448
           LP+ VFT+ YQP V+ G G  R  + +A  LL EAGW LK +   N  TG+PLSFELL+ 
Sbjct: 379 LPSEVFTQIYQPPVSKGDGYDRDNLLKADKLLNEAGWVLKGQQRVNATTGQPLSFELLLP 438

Query: 449 SPTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLI 508
           + +  +  +P Q +LQ +GI M IR VD +Q T R+R RD+DM+   + A P+PS +L I
Sbjct: 439 ASSNSQWVLPFQHSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRVWRAMPWPSSDLQI 498

Query: 509 VWNSNYMDSSYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWH 568
            W+S Y++S+YN+ G   PVID+L  QI  +Q + EKL  LG ALDRVL WN+Y++P W+
Sbjct: 499 SWSSEYINSTYNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWY 558

Query: 569 LSMYRVAMWDKFSRPSVLPKYSLGLDTWWIDQEKAARLP 607
           ++  R+A WDKFS+P+V P YSLG+DTWW D  KAA+LP
Sbjct: 559 MAEDRLAWWDKFSQPAVRPIYSLGIDTWWYDVNKAAKLP 597